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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = GCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19296 (1 seq.)
>WENV079144
AASZ01001665
Olavius algarvensis microbiome from Mediterranean sea
621
715
+
Ser
GCT
[ENA]
Identical group No.19297 (1 seq.)
>WENV079170
AASZ01002533
Olavius algarvensis microbiome from Mediterranean sea
3153
3059
-
Ser
GCT
[ENA]
Identical group No.44627 (1 seq.)
>WENV079089
AASZ01000213
Olavius algarvensis microbiome from Mediterranean sea
10446
10354
-
Ser
GCT
[ENA]
Identical group No.44628 (1 seq.)
>WENV079200
AASZ01004004
Olavius algarvensis microbiome from Mediterranean sea
766
674
-
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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