This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = GTA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190775 (11 seq.)
>W131224387
AUCT01000011
Thermodesulfobacteriota
Desulfatibacillum aliphaticivorans DSM 15576 [AUCT]
608
524
-
Tyr
GTA
[ENA]
¡û
>W141150575
AXAM01000052
Thermodesulfobacteriota
Desulfosarcina sp. BuS5 [AXAM]
2483
2567
+
Tyr
GTA
[ENA]
¡û
>W08005975
ABII01000040
Thermodesulfobacteriota
Desulfatibacillum alkenivorans AK-01 [ABII]
1445
1364
-
Tyr
GTA
[ENA]
¡û
>WENV183712732
PDWI01111861
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
655
571
-
Tyr
GTA
[ENA]
¢þ
>WENV183718405
PDWJ01003843
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13260
13344
+
Tyr
GTA
[ENA]
¢þ
>ENV08002274
ABPQ01000709
microbial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
358
442
+
Tyr
GTA
[ENA]
¡û
>ENV08002351
ABPS01002218
microbial mat metagenome; Guerrero Negro Hypersaline Mat 04; altitude 310m AMSL; sample depth 1m below water level, 3-4mm depth into the mat
646
562
-
Tyr
GTA
[ENA]
¡û
>WENV170697470
LGVF01139919
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
299
215
-
Tyr
GTA
[ENA]
¢þ
>C09103691
CP001322
Thermodesulfobacteriota
Desulfatibacillum aliphaticivorans AK-01 [CP001322]
2509236
2509152
-
Tyr
GTA
[Ensembl]
¡û
>WENV079130
AASZ01001380
Olavius algarvensis microbiome from Mediterranean sea
141
55
-
Tyr
GTA
[ENA]
>W1710589033
FQZU01000084
Thermodesulfobacteriota
Desulfatibacillum alkenivorans DSM 16219 [FQZU]
2544
2628
+
Tyr
GTA
[ENA]
¡û
Identical group No.195373 (6 seq.)
>WENV170013962
AVFP01000552
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
5539
5623
+
Tyr
GTA
[ENA]
¢þ
>WENV170143845
CENY01101780
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
224
140
-
Tyr
GTA
[ENA]
¢þ
>W1910208703
FLUY01000416
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUY]
1037
1121
+
Tyr
GTA
[ENA]
¡û
>W1910208761
FLUZ01000997
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUZ]
433
517
+
Tyr
GTA
[ENA]
¡û
>WENV079192
AASZ01003439
Olavius algarvensis microbiome from Mediterranean sea
1399
1483
+
Tyr
GTA
[ENA]
>W1710559099
FOMJ01000008
Gammaproteobacteria
Thiohalospira halophila [FOMJ]
1583
1499
-
Tyr
GTA
[ENA]
¡û
Identical group No.205833 (2 seq.)
>WENV180593659
OCOX01129958
[OCOX] marine metagenome; ENVO:00002010
189
273
+
Tyr
GTA
[ENA]
¢þ
>WENV079063
AASZ01000037
Olavius algarvensis microbiome from Mediterranean sea
934
1020
+
Tyr
GTA
[ENA]
Identical group No.215469 (1 seq.)
>WENV079189
AASZ01003109
Olavius algarvensis microbiome from Mediterranean sea
1070
986
-
Tyr
GTA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK