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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = GTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.639736 (2 seq.)
>WENV170006944
AMWB02069856
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2194
2269
+
Asn
GTT
[ENA]
¢þ
>WENV079111
AASZ01000859
Olavius algarvensis microbiome from Mediterranean sea
5449
5374
-
Asn
GTT
[ENA]
Identical group No.639742 (1 seq.)
>WENV079146
AASZ01001717
Olavius algarvensis microbiome from Mediterranean sea
4844
4767
-
Asn
GTT
[ENA]
Identical group No.639744 (1 seq.)
>WENV079157
AASZ01002160
Olavius algarvensis microbiome from Mediterranean sea
22571
22494
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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