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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = TAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.530374 (2 seq.)
>WENV180396850
OBPW01015297
[OBPW] marine metagenome; seawater
231
306
+
Val
TAC
[ENA]
¢þ
>WENV079070
AASZ01000046
Olavius algarvensis microbiome from Mediterranean sea
22113
22190
+
Val
TAC
[ENA]
Identical group No.551731 (16 seq.)
>W131208436
ATHJ01000107
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
24039
24114
+
Val
TAC
[ENA]
¡û
>C171038062
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
4430763
4430838
+
Val
TAC
-
¡û
>C171100868
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
4431341
4431416
+
Val
TAC
-
¡û
>w022487
AAWN01000057
Thermodesulfobacteriota
Desulfosudis oleivorans oleovorans Hxd3 [AAWN]
16309
16237
-
Val
TAC
[ENA]
¡û
>C08004133
CP000859
Thermodesulfobacteriota
Desulfosudis oleivorans Hxd3 [CP000859]
3247831
3247906
+
Val
TAC
[Ensembl]
¡û
>WENV183705411
PDWI01001512
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19232
19307
+
Val
TAC
[ENA]
¢þ
>WENV183706102
PDWI01003101
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
571
496
-
Val
TAC
[ENA]
¢þ
>WENV183706200
PDWI01003414
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
23
-
Val
TAC
[ENA]
¢þ
>WENV183707361
PDWI01008043
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9209
9134
-
Val
TAC
[ENA]
¢þ
>WENV183708136
PDWI01013276
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
212
137
-
Val
TAC
[ENA]
¢þ
>WENV183712255
PDWI01093668
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
23
-
Val
TAC
[ENA]
¢þ
>WENV183716606
PDWJ01000068
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
54047
54122
+
Val
TAC
[ENA]
¢þ
>WENV183718662
PDWJ01005696
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
98
23
-
Val
TAC
[ENA]
¢þ
>WENV170013940
AVFP01000159
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
4173
4248
+
Val
TAC
[ENA]
¢þ
>WENV079112
AASZ01000892
Olavius algarvensis microbiome from Mediterranean sea
3865
3940
+
Val
TAC
[ENA]
>W1710600563
FUWN01000034
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
4720
4645
-
Val
TAC
[ENA]
¡û
Identical group No.639738 (2 seq.)
>W141170198
AXXL01000046
Unclassified
delta proteobacterium PSCGC 5342 [AXXL]
8046
8121
+
Val
TAC
[ENA]
¡û
>WENV079122
AASZ01001009
Olavius algarvensis microbiome from Mediterranean sea
9208
9133
-
Val
TAC
[ENA]
Identical group No.639749 (2 seq.)
>WENV079203
AASZ01004387
Olavius algarvensis microbiome from Mediterranean sea
368
293
-
Val
TAC
[ENA]
>WENV079206
AASZ01004653
Olavius algarvensis microbiome from Mediterranean sea
970
895
-
Val
TAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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