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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124014 (10 seq.)
>WENV180297418
OBJA01030291
[OBJA] soil metagenome; sediment, water from around vicinity
499
585
+
Leu
TAG
[ENA]
¢þ
>WENV183710489
PDWI01047621
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2173
2087
-
Leu
TAG
[ENA]
¢þ
>WENV183717901
PDWJ01001924
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9897
9983
+
Leu
TAG
[ENA]
¢þ
>WENV170006448
AMWB02024429
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2094
2008
-
Leu
TAG
[ENA]
¢þ
>WENV170697419
LGVF01131951
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
631
545
-
Leu
TAG
[ENA]
¢þ
>W1510021718
BCAG01000001
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
301969
302055
+
Leu
TAG
[ENA]
¡û
>W1511564364
LADR01000029
Thermodesulfobacteriota
Desulfatitalea sp. BRH_c12 [LADR]
92676
92590
-
Leu
TAG
[ENA]
¡û
>W1610046103
BBCC01000062
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
13584
13670
+
Leu
TAG
[ENA]
¡û
>WENV079121
AASZ01001009
Olavius algarvensis microbiome from Mediterranean sea
1780
1868
+
Leu
TAG
[ENA]
>W1710042899
BBCC01000062
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
13584
13670
+
Leu
TAG
[ENA]
¡û
Identical group No.150933 (1 seq.)
>WENV079179
AASZ01002820
Olavius algarvensis microbiome from Mediterranean sea
3325
3413
+
Leu
TAG
[ENA]
Identical group No.178185 (1 seq.)
>WENV079069
AASZ01000046
Olavius algarvensis microbiome from Mediterranean sea
15306
15391
+
Leu
TAG
[ENA]
Identical group No.215468 (1 seq.)
>WENV079103
AASZ01000663
Olavius algarvensis microbiome from Mediterranean sea
1243
1327
+
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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