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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = TGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110522 (1 seq.)
>WENV079143
AASZ01001664
Olavius algarvensis microbiome from Mediterranean sea
2768
2857
+
Ser
TGA
[ENA]
Identical group No.160991 (6 seq.)
>WENV183721154
PDWJ01057171
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1276
1191
-
Ser
TGA
[ENA]
¢þ
>W1510021725
BCAG01000001
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
216297
216212
-
Ser
TGA
[ENA]
¡û
>W1511564371
LADR01000049
Thermodesulfobacteriota
Desulfatitalea sp. BRH_c12 [LADR]
82724
82639
-
Ser
TGA
[ENA]
¡û
>W1610046124
BBCC01000176
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
6281
6366
+
Ser
TGA
[ENA]
¡û
>WENV079171
AASZ01002533
Olavius algarvensis microbiome from Mediterranean sea
3354
3269
-
Ser
TGA
[ENA]
>W1710042920
BBCC01000176
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
6281
6366
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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