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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = TGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537452 (19 seq.)
>W141207896
AZOD01000004
Gammaproteobacteria
Ignatzschineria larvae DSM 13226 [AZOD]
78706
78781
+
Thr
TGT
[ENA]
¡û
>W141561658
JHYQ01000005
Gammaproteobacteria
Thiothrix lacustris DSM 21227 [JHYQ]
95319
95394
+
Thr
TGT
[ENA]
¡û
>W1910882368
NEFF01000007
Gammaproteobacteria
Ignatzschineria sp. F8392 [NEFF]
62560
62635
+
Thr
TGT
[ENA]
¡û
>W1910882369
NEFF01000007
Gammaproteobacteria
Ignatzschineria sp. F8392 [NEFF]
62778
62853
+
Thr
TGT
[ENA]
¡û
>W1810582767
QEWQ01000006
Gammaproteobacteria
Ignatzschineria ureiclastica KCTC 22644 [QEWQ]
219885
219810
-
Thr
TGT
[ENA]
¡û
>W1810582834
QEWR01000008
Gammaproteobacteria
Ignatzschineria indica KCTC 22643 [QEWR]
34772
34697
-
Thr
TGT
[ENA]
¡û
>W1810582835
QEWR01000008
Gammaproteobacteria
Ignatzschineria indica KCTC 22643 [QEWR]
34424
34349
-
Thr
TGT
[ENA]
¡û
>W1810582872
QEWS01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU61 [QEWS]
34774
34699
-
Thr
TGT
[ENA]
¡û
>W1810582873
QEWS01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU61 [QEWS]
34492
34417
-
Thr
TGT
[ENA]
¡û
>W1810582931
QEWT01000010
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU60 [QEWT]
34631
34556
-
Thr
TGT
[ENA]
¡û
>W1810582932
QEWT01000010
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU60 [QEWT]
34350
34275
-
Thr
TGT
[ENA]
¡û
>W1810582979
QEWU01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU59 [QEWU]
64041
64116
+
Thr
TGT
[ENA]
¡û
>W1810582980
QEWU01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU59 [QEWU]
64323
64398
+
Thr
TGT
[ENA]
¡û
>W1810583033
QEWV01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU58 [QEWV]
34774
34699
-
Thr
TGT
[ENA]
¡û
>W1810583034
QEWV01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU58 [QEWV]
34492
34417
-
Thr
TGT
[ENA]
¡û
>W1810583087
QEWW01000005
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU57 [QEWW]
34254
34179
-
Thr
TGT
[ENA]
¡û
>W1810583088
QEWW01000005
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU57 [QEWW]
33972
33897
-
Thr
TGT
[ENA]
¡û
>WENV079086
AASZ01000202
Olavius algarvensis microbiome from Mediterranean sea
19197
19120
-
Thr
TGT
[ENA]
>W1710532777
FNQP01000011
Gammaproteobacteria
Thiothrix caldifontis [FNQP]
130657
130732
+
Thr
TGT
[ENA]
¡û
Identical group No.639739 (1 seq.)
>WENV079131
AASZ01001380
Olavius algarvensis microbiome from Mediterranean sea
230
153
-
Thr
TGT
[ENA]
Identical group No.639743 (1 seq.)
>WENV079149
AASZ01001876
Olavius algarvensis microbiome from Mediterranean sea
283
208
-
Thr
TGT
[ENA]
Identical group No.639747 (1 seq.)
>WENV079190
AASZ01003109
Olavius algarvensis microbiome from Mediterranean sea
1311
1234
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK