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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7a microbial communities of Human
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155620 (23 seq.)
>w027304
ABBV01004550
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
673
586
-
Leu
GAG
[ENA]
¡û
>WENV180720462
ODGJ01048427
[ODGJ] human metagenome; G_DNA_Tongue dorsum
5
90
+
Leu
GAG
[ENA]
¢þ
>WENV180773801
ODIJ01002395
[ODIJ] human metagenome; G_DNA_Tongue dorsum
325
240
-
Leu
GAG
[ENA]
¢þ
>WENV180792511
ODIW01000689
[ODIW] human metagenome; G_DNA_Tongue dorsum
22823
22908
+
Leu
GAG
[ENA]
¢þ
>WENV180802327
ODJE01001162
[ODJE] human metagenome; G_DNA_Tongue dorsum
4222
4137
-
Leu
GAG
[ENA]
¢þ
>WENV180807300
ODJI01001214
[ODJI] human metagenome; G_DNA_Tongue dorsum
11940
12025
+
Leu
GAG
[ENA]
¢þ
>WENV180816557
ODJP01023006
[ODJP] human metagenome; G_DNA_Tongue dorsum
899
814
-
Leu
GAG
[ENA]
¢þ
>WENV180819768
ODJR01000456
[ODJR] human metagenome; G_DNA_Tongue dorsum
36323
36238
-
Leu
GAG
[ENA]
¢þ
>WENV180854075
ODKX01000690
[ODKX] human metagenome; G_DNA_Tongue dorsum
2099
2014
-
Leu
GAG
[ENA]
¢þ
>WENV180883478
ODMC01006076
[ODMC] human metagenome; G_DNA_Tongue dorsum
4944
4859
-
Leu
GAG
[ENA]
¢þ
>WENV180896572
ODNI01001087
[ODNI] human metagenome; G_DNA_Tongue dorsum
5649
5564
-
Leu
GAG
[ENA]
¢þ
>WENV180930856
ODTP01000508
[ODTP] human metagenome; G_DNA_Tongue dorsum
7633
7548
-
Leu
GAG
[ENA]
¢þ
>WENV180976234
ODUY01063021
[ODUY] human metagenome; G_DNA_Supragingival plaque
193
278
+
Leu
GAG
[ENA]
¢þ
>WENV181011727
ODWI01096177
[ODWI] human metagenome; G_DNA_Tongue dorsum
259
174
-
Leu
GAG
[ENA]
¢þ
>WENV181040661
ODXS01000391
[ODXS] human metagenome; G_DNA_Tongue dorsum
20801
20886
+
Leu
GAG
[ENA]
¢þ
>WENV181084948
OEAX01000609
[OEAX] human metagenome; G_DNA_Tongue dorsum
167
82
-
Leu
GAG
[ENA]
¢þ
>WENV181087675
OEAY01119816
[OEAY] human metagenome; G_DNA_Tongue dorsum
211
126
-
Leu
GAG
[ENA]
¢þ
>WENV181102700
OECT01008133
[OECT] human metagenome; G_DNA_Tongue dorsum
75
160
+
Leu
GAG
[ENA]
¢þ
>WENV181103594
OECV01000453
[OECV] human metagenome; G_DNA_Throat
784
869
+
Leu
GAG
[ENA]
¢þ
>WENV181113233
OEEL01016185
[OEEL] human metagenome; G_DNA_Tongue dorsum
1570
1485
-
Leu
GAG
[ENA]
¢þ
>WENV181114276
OEEO01000318
[OEEO] human metagenome; G_DNA_Supragingival plaque
18971
19056
+
Leu
GAG
[ENA]
¢þ
>WENV181582077
OGKB01000366
[OGKB] metagenome; Human gut stool
30465
30550
+
Leu
GAG
[ENA]
¢þ
>WENV080315
ABBV01004550
Oral TM7a microbial communities of Human
673
586
-
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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