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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7a microbial communities of Human
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183021 (57 seq.)
>w027294
ABBV01002717
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
110
24
-
Leu
TAG
[ENA]
¡û
>WENV180721617
ODGL01003565
[ODGL] human metagenome; G_DNA_Subgingival plaque
1001
1085
+
Leu
TAG
[ENA]
¢þ
>WENV180728100
ODGU01024450
[ODGU] human metagenome; G_DNA_Supragingival plaque
723
639
-
Leu
TAG
[ENA]
¢þ
>WENV180734596
ODGZ01014022
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1102
1186
+
Leu
TAG
[ENA]
¢þ
>WENV180739198
ODHD01013429
[ODHD] human metagenome; G_DNA_Supragingival plaque
523
439
-
Leu
TAG
[ENA]
¢þ
>WENV180749801
ODHS01000029
[ODHS] human metagenome; G_DNA_Supragingival plaque
107229
107313
+
Leu
TAG
[ENA]
¢þ
>WENV180765289
ODIB01071139
[ODIB] human metagenome; G_DNA_Supragingival plaque
83
-1
-
Leu
TAG
[ENA]
¢þ
>WENV180788102
ODIS01030946
[ODIS] human metagenome; G_DNA_Supragingival plaque
1207
1291
+
Leu
TAG
[ENA]
¢þ
>WENV180795511
ODJB01000017
[ODJB] human metagenome; G_DNA_Supragingival plaque
151263
151179
-
Leu
TAG
[ENA]
¢þ
>WENV180800560
ODJD01000172
[ODJD] human metagenome; G_DNA_Supragingival plaque
35956
35872
-
Leu
TAG
[ENA]
¢þ
>WENV180800626
ODJD01000313
[ODJD] human metagenome; G_DNA_Supragingival plaque
7632
7716
+
Leu
TAG
[ENA]
¢þ
>WENV180804983
ODJG01032260
[ODJG] human metagenome; G_DNA_Supragingival plaque
638
722
+
Leu
TAG
[ENA]
¢þ
>WENV180808513
ODJK01000137
[ODJK] human metagenome; G_DNA_Subgingival plaque
7356
7440
+
Leu
TAG
[ENA]
¢þ
>WENV180808973
ODJK01002447
[ODJK] human metagenome; G_DNA_Subgingival plaque
269
353
+
Leu
TAG
[ENA]
¢þ
>WENV180814760
ODJO01049151
[ODJO] human metagenome; G_DNA_Supragingival plaque
120
36
-
Leu
TAG
[ENA]
¢þ
>WENV180823834
ODJW01209803
[ODJW] human metagenome; G_DNA_Supragingival plaque
58
142
+
Leu
TAG
[ENA]
¢þ
>WENV180823924
ODJX01000011
[ODJX] human metagenome; G_DNA_Supragingival plaque
108321
108405
+
Leu
TAG
[ENA]
¢þ
>WENV180843097
ODKN01000505
[ODKN] human metagenome; G_DNA_Supragingival plaque
17220
17136
-
Leu
TAG
[ENA]
¢þ
>WENV180846619
ODKT01016522
[ODKT] human metagenome; G_DNA_Supragingival plaque
1364
1448
+
Leu
TAG
[ENA]
¢þ
>WENV180859705
ODLD01002735
[ODLD] human metagenome; G_DNA_Supragingival plaque
2440
2524
+
Leu
TAG
[ENA]
¢þ
>WENV180888354
ODMN01000568
[ODMN] human metagenome; G_DNA_Supragingival plaque
3642
3726
+
Leu
TAG
[ENA]
¢þ
>WENV180921528
ODTJ01000101
[ODTJ] human metagenome; G_DNA_Supragingival plaque
66198
66282
+
Leu
TAG
[ENA]
¢þ
>WENV180923854
ODTK01000251
[ODTK] human metagenome; G_DNA_Supragingival plaque
43395
43479
+
Leu
TAG
[ENA]
¢þ
>WENV180935239
ODTS01134109
[ODTS] human metagenome; G_DNA_Subgingival plaque
129
45
-
Leu
TAG
[ENA]
¢þ
>WENV180937986
ODTX01000333
[ODTX] human metagenome; G_DNA_Supragingival plaque
40603
40687
+
Leu
TAG
[ENA]
¢þ
>WENV180944907
ODUC01046781
[ODUC] human metagenome; G_DNA_Supragingival plaque
679
763
+
Leu
TAG
[ENA]
¢þ
>WENV180951465
ODUH01025200
[ODUH] human metagenome; G_DNA_Subgingival plaque
86
2
-
Leu
TAG
[ENA]
¢þ
>WENV180976024
ODUY01039030
[ODUY] human metagenome; G_DNA_Supragingival plaque
84
1
-
Leu
TAG
[ENA]
¢þ
>WENV180980618
ODVE01000791
[ODVE] human metagenome; G_DNA_Supragingival plaque
1752
1668
-
Leu
TAG
[ENA]
¢þ
>WENV180983808
ODVF01041280
[ODVF] human metagenome; G_DNA_Supragingival plaque
359
275
-
Leu
TAG
[ENA]
¢þ
>WENV180987616
ODVK01055610
[ODVK] human metagenome; G_DNA_Supragingival plaque
185
269
+
Leu
TAG
[ENA]
¢þ
>WENV180998697
ODVT01001326
[ODVT] human metagenome; G_DNA_Buccal mucosa
5813
5897
+
Leu
TAG
[ENA]
¢þ
>WENV181003231
ODVX01006977
[ODVX] human metagenome; G_DNA_Supragingival plaque
2068
1984
-
Leu
TAG
[ENA]
¢þ
>WENV181007211
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
213267
213351
+
Leu
TAG
[ENA]
¢þ
>WENV181018665
ODWU01000015
[ODWU] human metagenome; G_DNA_Supragingival plaque
148618
148534
-
Leu
TAG
[ENA]
¢þ
>WENV181043126
ODXU01048155
[ODXU] human metagenome; G_DNA_Buccal mucosa
51
135
+
Leu
TAG
[ENA]
¢þ
>WENV181063011
ODYP01000024
[ODYP] human metagenome; G_DNA_Supragingival plaque
64562
64478
-
Leu
TAG
[ENA]
¢þ
>WENV181066417
ODZI01000019
[ODZI] human metagenome; G_DNA_Supragingival plaque
1153
1069
-
Leu
TAG
[ENA]
¢þ
>WENV181075643
OEAP01000104
[OEAP] human metagenome; G_DNA_Supragingival plaque
39723
39639
-
Leu
TAG
[ENA]
¢þ
>WENV181078676
OEAS01000280
[OEAS] human metagenome; G_DNA_Supragingival plaque
32887
32803
-
Leu
TAG
[ENA]
¢þ
>WENV181080352
OEAS01041905
[OEAS] human metagenome; G_DNA_Supragingival plaque
1543
1627
+
Leu
TAG
[ENA]
¢þ
>WENV181083802
OEAV01024831
[OEAV] human metagenome; G_DNA_Supragingival plaque
1238
1322
+
Leu
TAG
[ENA]
¢þ
>WENV181090404
OEBC01000408
[OEBC] human metagenome; G_DNA_Supragingival plaque
4431
4515
+
Leu
TAG
[ENA]
¢þ
>WENV181106571
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
268468
268552
+
Leu
TAG
[ENA]
¢þ
>WENV181121687
OEFL01014089
[OEFL] human metagenome; G_DNA_Supragingival plaque
1745
1829
+
Leu
TAG
[ENA]
¢þ
>WENV181137730
OEGJ01017578
[OEGJ] human metagenome; G_DNA_Supragingival plaque
116
32
-
Leu
TAG
[ENA]
¢þ
>WENV181143417
OEHM01000729
[OEHM] human metagenome; G_DNA_Supragingival plaque
6712
6628
-
Leu
TAG
[ENA]
¢þ
>WENV181146192
OEHQ01001668
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5483
5567
+
Leu
TAG
[ENA]
¢þ
>WENV181151991
OEIA01000009
[OEIA] human metagenome; G_DNA_Supragingival plaque
82513
82597
+
Leu
TAG
[ENA]
¢þ
>WENV181178313
OEJS01164857
[OEJS] human metagenome; G_DNA_Supragingival plaque
160
76
-
Leu
TAG
[ENA]
¢þ
>WENV181179138
OEJT01001533
[OEJT] human metagenome; G_DNA_Supragingival plaque
5565
5649
+
Leu
TAG
[ENA]
¢þ
>WENV183508745
OMHF01001974
[OMHF] human oral metagenome; human oral
1041
957
-
Leu
TAG
[ENA]
¢þ
>WENV183509973
OMHL01000104
[OMHL] human oral metagenome; human oral
818
734
-
Leu
TAG
[ENA]
¢þ
>C191173711
CP040004
Unclassified
Candidatus Nanosynbacter featherlites BB001 [CP040004]
421621
421537
-
Leu
TAG
-
¡û
>C191173938
CP040011
Unclassified
TM7 phylum sp. oral taxon 952 TM7x [CP040011]
400714
400630
-
Leu
TAG
-
¡û
>C151025508
CP007496
Unclassified
Candidatus Nanosynbacter lyticus TM7x [CP007496]
400668
400584
-
Leu
TAG
[Ensembl]
¡û
>WENV080305
ABBV01002717
Oral TM7a microbial communities of Human
110
24
-
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK