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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7b microbial communities of Human
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270383 (39 seq.)
>w027329
ABBX01000056
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
3538
3614
+
Thr
GGT
[ENA]
¡û
>w027311
ABBW01000069
Unclassified
candidate division TM7 single-cell isolate TM7b TM7 isolate TM7b [ABBW]
786
862
+
Thr
GGT
[ENA]
¡û
>WENV180726411
ODGU01000013
[ODGU] human metagenome; G_DNA_Supragingival plaque
79964
80040
+
Thr
GGT
[ENA]
¢þ
>WENV180739368
ODHD01049533
[ODHD] human metagenome; G_DNA_Supragingival plaque
86
162
+
Thr
GGT
[ENA]
¢þ
>WENV180750428
ODHS01002217
[ODHS] human metagenome; G_DNA_Supragingival plaque
637
713
+
Thr
GGT
[ENA]
¢þ
>WENV180764775
ODIB01001024
[ODIB] human metagenome; G_DNA_Supragingival plaque
1618
1542
-
Thr
GGT
[ENA]
¢þ
>WENV180778795
ODIM01101602
[ODIM] human metagenome; G_DNA_Supragingival plaque
74
150
+
Thr
GGT
[ENA]
¢þ
>WENV180787244
ODIS01002571
[ODIS] human metagenome; G_DNA_Supragingival plaque
4645
4721
+
Thr
GGT
[ENA]
¢þ
>WENV180795939
ODJB01000650
[ODJB] human metagenome; G_DNA_Supragingival plaque
665
741
+
Thr
GGT
[ENA]
¢þ
>WENV180800533
ODJD01000103
[ODJD] human metagenome; G_DNA_Supragingival plaque
22993
23069
+
Thr
GGT
[ENA]
¢þ
>WENV180803646
ODJG01000009
[ODJG] human metagenome; G_DNA_Supragingival plaque
54224
54148
-
Thr
GGT
[ENA]
¢þ
>WENV180808399
ODJK01000016
[ODJK] human metagenome; G_DNA_Subgingival plaque
72250
72326
+
Thr
GGT
[ENA]
¢þ
>WENV180812918
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
417672
417748
+
Thr
GGT
[ENA]
¢þ
>WENV180823894
ODJX01000003
[ODJX] human metagenome; G_DNA_Supragingival plaque
127852
127928
+
Thr
GGT
[ENA]
¢þ
>WENV180834461
ODKD01030502
[ODKD] human metagenome; G_DNA_Supragingival plaque
156
232
+
Thr
GGT
[ENA]
¢þ
>WENV180846752
ODKT01022031
[ODKT] human metagenome; G_DNA_Supragingival plaque
1837
1761
-
Thr
GGT
[ENA]
¢þ
>WENV180859244
ODLD01000124
[ODLD] human metagenome; G_DNA_Supragingival plaque
48776
48700
-
Thr
GGT
[ENA]
¢þ
>WENV180887974
ODMN01000007
[ODMN] human metagenome; G_DNA_Supragingival plaque
102563
102639
+
Thr
GGT
[ENA]
¢þ
>WENV180921463
ODTJ01000065
[ODTJ] human metagenome; G_DNA_Supragingival plaque
20948
20872
-
Thr
GGT
[ENA]
¢þ
>WENV180924028
ODTK01000782
[ODTK] human metagenome; G_DNA_Supragingival plaque
4494
4570
+
Thr
GGT
[ENA]
¢þ
>WENV180937688
ODTX01000026
[ODTX] human metagenome; G_DNA_Supragingival plaque
54190
54114
-
Thr
GGT
[ENA]
¢þ
>WENV180944088
ODUC01007413
[ODUC] human metagenome; G_DNA_Supragingival plaque
4657
4581
-
Thr
GGT
[ENA]
¢þ
>WENV180980824
ODVE01002336
[ODVE] human metagenome; G_DNA_Supragingival plaque
6502
6578
+
Thr
GGT
[ENA]
¢þ
>WENV180982573
ODVF01000117
[ODVF] human metagenome; G_DNA_Supragingival plaque
53858
53782
-
Thr
GGT
[ENA]
¢þ
>WENV180998018
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
102563
102639
+
Thr
GGT
[ENA]
¢þ
>WENV181002020
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
100596
100672
+
Thr
GGT
[ENA]
¢þ
>WENV181007216
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
269220
269144
-
Thr
GGT
[ENA]
¢þ
>WENV181063009
ODYP01000024
[ODYP] human metagenome; G_DNA_Supragingival plaque
8837
8913
+
Thr
GGT
[ENA]
¢þ
>WENV181066387
ODZI01000006
[ODZI] human metagenome; G_DNA_Supragingival plaque
54223
54147
-
Thr
GGT
[ENA]
¢þ
>WENV181077482
OEAP01062669
[OEAP] human metagenome; G_DNA_Supragingival plaque
92
16
-
Thr
GGT
[ENA]
¢þ
>WENV181078491
OEAS01000097
[OEAS] human metagenome; G_DNA_Supragingival plaque
45615
45691
+
Thr
GGT
[ENA]
¢þ
>WENV181083982
OEAV01042423
[OEAV] human metagenome; G_DNA_Supragingival plaque
678
602
-
Thr
GGT
[ENA]
¢þ
>WENV181091568
OEBC01049915
[OEBC] human metagenome; G_DNA_Supragingival plaque
796
720
-
Thr
GGT
[ENA]
¢þ
>WENV181106659
OEEI01000016
[OEEI] human metagenome; G_DNA_Supragingival plaque
20945
20869
-
Thr
GGT
[ENA]
¢þ
>WENV181121484
OEFL01005247
[OEFL] human metagenome; G_DNA_Supragingival plaque
3680
3604
-
Thr
GGT
[ENA]
¢þ
>WENV181145689
OEHQ01000009
[OEHQ] human metagenome; G_DNA_Supragingival plaque
124742
124666
-
Thr
GGT
[ENA]
¢þ
>WENV181151997
OEIA01000009
[OEIA] human metagenome; G_DNA_Supragingival plaque
138262
138186
-
Thr
GGT
[ENA]
¢þ
>WENV080322
ABBW01000069
Oral TM7b microbial communities of Human
786
862
+
Thr
GGT
[ENA]
>WENV080342
ABBX01000056
Oral TM7c microbial communities of Human
3538
3614
+
Thr
GGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK