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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7b microbial communities of Human
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270390 (41 seq.)
>w027341
ABBX01000127
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
34527
34454
-
Arg
TCG
[ENA]
¡û
>w027307
ABBW01000001
Unclassified
candidate division TM7 single-cell isolate TM7b TM7 isolate TM7b [ABBW]
326
253
-
Arg
TCG
[ENA]
¡û
>w027306
ABBV01008526
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
69
145
+
Arg
TCG
[ENA]
¡û
>WENV180241126
OBDF01033730
[OBDF] human oral metagenome; human oral
201
277
+
Arg
TCG
[ENA]
¢þ
>WENV180726471
ODGU01000036
[ODGU] human metagenome; G_DNA_Supragingival plaque
61006
60930
-
Arg
TCG
[ENA]
¢þ
>WENV180733299
ODGY01116828
[ODGY] human metagenome; G_DNA_Supragingival plaque
99
175
+
Arg
TCG
[ENA]
¢þ
>WENV180749826
ODHS01000036
[ODHS] human metagenome; G_DNA_Supragingival plaque
41797
41873
+
Arg
TCG
[ENA]
¢þ
>WENV180764725
ODIB01000569
[ODIB] human metagenome; G_DNA_Supragingival plaque
4221
4145
-
Arg
TCG
[ENA]
¢þ
>WENV180778636
ODIM01026474
[ODIM] human metagenome; G_DNA_Supragingival plaque
523
447
-
Arg
TCG
[ENA]
¢þ
>WENV180787484
ODIS01006955
[ODIS] human metagenome; G_DNA_Supragingival plaque
610
686
+
Arg
TCG
[ENA]
¢þ
>WENV180795620
ODJB01000080
[ODJB] human metagenome; G_DNA_Supragingival plaque
56515
56439
-
Arg
TCG
[ENA]
¢þ
>WENV180800451
ODJD01000026
[ODJD] human metagenome; G_DNA_Supragingival plaque
37584
37660
+
Arg
TCG
[ENA]
¢þ
>WENV180803791
ODJG01000063
[ODJG] human metagenome; G_DNA_Supragingival plaque
1173
1249
+
Arg
TCG
[ENA]
¢þ
>WENV180808405
ODJK01000021
[ODJK] human metagenome; G_DNA_Subgingival plaque
19988
20064
+
Arg
TCG
[ENA]
¢þ
>WENV180813025
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
152986
153062
+
Arg
TCG
[ENA]
¢þ
>WENV180823931
ODJX01000013
[ODJX] human metagenome; G_DNA_Supragingival plaque
44055
44131
+
Arg
TCG
[ENA]
¢þ
>WENV180853463
ODKW01124928
[ODKW] human metagenome; G_DNA_Tongue dorsum
182
106
-
Arg
TCG
[ENA]
¢þ
>WENV180859778
ODLD01004370
[ODLD] human metagenome; G_DNA_Supragingival plaque
1126
1202
+
Arg
TCG
[ENA]
¢þ
>WENV180888069
ODMN01000037
[ODMN] human metagenome; G_DNA_Supragingival plaque
60142
60066
-
Arg
TCG
[ENA]
¢þ
>WENV180921509
ODTJ01000091
[ODTJ] human metagenome; G_DNA_Supragingival plaque
70485
70409
-
Arg
TCG
[ENA]
¢þ
>WENV180923808
ODTK01000202
[ODTK] human metagenome; G_DNA_Supragingival plaque
46001
45925
-
Arg
TCG
[ENA]
¢þ
>WENV180937669
ODTX01000024
[ODTX] human metagenome; G_DNA_Supragingival plaque
43147
43223
+
Arg
TCG
[ENA]
¢þ
>WENV180943248
ODUC01000065
[ODUC] human metagenome; G_DNA_Supragingival plaque
1120
1196
+
Arg
TCG
[ENA]
¢þ
>WENV180981309
ODVE01014857
[ODVE] human metagenome; G_DNA_Supragingival plaque
1031
955
-
Arg
TCG
[ENA]
¢þ
>WENV180982519
ODVF01000055
[ODVF] human metagenome; G_DNA_Supragingival plaque
19817
19893
+
Arg
TCG
[ENA]
¢þ
>WENV180998025
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
308411
308487
+
Arg
TCG
[ENA]
¢þ
>WENV181002028
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
310885
310961
+
Arg
TCG
[ENA]
¢þ
>WENV181007222
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
61006
60930
-
Arg
TCG
[ENA]
¢þ
>WENV181062987
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
68875
68951
+
Arg
TCG
[ENA]
¢þ
>WENV181066459
ODZI01000052
[ODZI] human metagenome; G_DNA_Supragingival plaque
43230
43306
+
Arg
TCG
[ENA]
¢þ
>WENV181075945
OEAP01000855
[OEAP] human metagenome; G_DNA_Supragingival plaque
1735
1659
-
Arg
TCG
[ENA]
¢þ
>WENV181078432
OEAS01000066
[OEAS] human metagenome; G_DNA_Supragingival plaque
60994
60918
-
Arg
TCG
[ENA]
¢þ
>WENV181106578
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
114897
114821
-
Arg
TCG
[ENA]
¢þ
>WENV181121067
OEFL01000341
[OEFL] human metagenome; G_DNA_Supragingival plaque
75
151
+
Arg
TCG
[ENA]
¢þ
>WENV181137596
OEGJ01008079
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1679
1603
-
Arg
TCG
[ENA]
¢þ
>WENV181145958
OEHQ01000318
[OEHQ] human metagenome; G_DNA_Supragingival plaque
20534
20610
+
Arg
TCG
[ENA]
¢þ
>WENV181152091
OEIA01000086
[OEIA] human metagenome; G_DNA_Supragingival plaque
42934
42858
-
Arg
TCG
[ENA]
¢þ
>WENV181178190
OEJS01085181
[OEJS] human metagenome; G_DNA_Supragingival plaque
141
217
+
Arg
TCG
[ENA]
¢þ
>WENV080317
ABBV01008526
Oral TM7a microbial communities of Human
69
145
+
Arg
TCG
[ENA]
>WENV080318
ABBW01000001
Oral TM7b microbial communities of Human
326
250
-
Arg
TCG
[ENA]
>WENV080356
ABBX01000127
Oral TM7c microbial communities of Human
34527
34451
-
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK