This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112234 (29 seq.)
>w027327
ABBX01000031
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
4126
4214
+
Leu
CAA
[ENA]
¡û
>w027288
ABBV01001038
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
683
771
+
Leu
CAA
[ENA]
¡û
>WENV180749837
ODHS01000041
[ODHS] human metagenome; G_DNA_Supragingival plaque
78729
78643
-
Leu
CAA
[ENA]
¢þ
>WENV180764729
ODIB01000619
[ODIB] human metagenome; G_DNA_Supragingival plaque
6686
6600
-
Leu
CAA
[ENA]
¢þ
>WENV180787180
ODIS01001962
[ODIS] human metagenome; G_DNA_Supragingival plaque
7246
7332
+
Leu
CAA
[ENA]
¢þ
>WENV180796000
ODJB01000917
[ODJB] human metagenome; G_DNA_Supragingival plaque
9836
9750
-
Leu
CAA
[ENA]
¢þ
>WENV180801178
ODJD01011678
[ODJD] human metagenome; G_DNA_Supragingival plaque
1764
1850
+
Leu
CAA
[ENA]
¢þ
>WENV180803643
ODJG01000009
[ODJG] human metagenome; G_DNA_Supragingival plaque
128912
128826
-
Leu
CAA
[ENA]
¢þ
>WENV180808800
ODJK01001104
[ODJK] human metagenome; G_DNA_Subgingival plaque
2354
2268
-
Leu
CAA
[ENA]
¢þ
>WENV180812915
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
342984
343070
+
Leu
CAA
[ENA]
¢þ
>WENV180847285
ODKT01058842
[ODKT] human metagenome; G_DNA_Supragingival plaque
740
654
-
Leu
CAA
[ENA]
¢þ
>WENV180859364
ODLD01000494
[ODLD] human metagenome; G_DNA_Supragingival plaque
3154
3068
-
Leu
CAA
[ENA]
¢þ
>WENV180887971
ODMN01000007
[ODMN] human metagenome; G_DNA_Supragingival plaque
24653
24739
+
Leu
CAA
[ENA]
¢þ
>WENV180921460
ODTJ01000065
[ODTJ] human metagenome; G_DNA_Supragingival plaque
98351
98265
-
Leu
CAA
[ENA]
¢þ
>WENV180924143
ODTK01001388
[ODTK] human metagenome; G_DNA_Supragingival plaque
3134
3048
-
Leu
CAA
[ENA]
¢þ
>WENV180937685
ODTX01000026
[ODTX] human metagenome; G_DNA_Supragingival plaque
128878
128792
-
Leu
CAA
[ENA]
¢þ
>WENV180943428
ODUC01000480
[ODUC] human metagenome; G_DNA_Supragingival plaque
2370
2284
-
Leu
CAA
[ENA]
¢þ
>WENV180982713
ODVF01000360
[ODVF] human metagenome; G_DNA_Supragingival plaque
10459
10373
-
Leu
CAA
[ENA]
¢þ
>WENV180998015
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
24653
24739
+
Leu
CAA
[ENA]
¢þ
>WENV181002017
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
26967
27053
+
Leu
CAA
[ENA]
¢þ
>WENV181076279
OEAP01003206
[OEAP] human metagenome; G_DNA_Supragingival plaque
7888
7974
+
Leu
CAA
[ENA]
¢þ
>WENV181078617
OEAS01000192
[OEAS] human metagenome; G_DNA_Supragingival plaque
11060
11146
+
Leu
CAA
[ENA]
¢þ
>WENV181084124
OEAV01069183
[OEAV] human metagenome; G_DNA_Supragingival plaque
554
468
-
Leu
CAA
[ENA]
¢þ
>WENV181106656
OEEI01000016
[OEEI] human metagenome; G_DNA_Supragingival plaque
95633
95547
-
Leu
CAA
[ENA]
¢þ
>WENV181138031
OEGJ01081735
[OEGJ] human metagenome; G_DNA_Supragingival plaque
94
8
-
Leu
CAA
[ENA]
¢þ
>WENV181145830
OEHQ01000123
[OEHQ] human metagenome; G_DNA_Supragingival plaque
32578
32492
-
Leu
CAA
[ENA]
¢þ
>WENV181152154
OEIA01000205
[OEIA] human metagenome; G_DNA_Supragingival plaque
22998
23084
+
Leu
CAA
[ENA]
¢þ
>WENV080299
ABBV01001038
Oral TM7a microbial communities of Human
683
771
+
Leu
CAA
[ENA]
>WENV080338
ABBX01000031
Oral TM7c microbial communities of Human
4126
4214
+
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK