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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653322 (33 seq.)
>w027328
ABBX01000046
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
13154
13230
+
Trp
CCA
[ENA]
¡û
>WENV180726410
ODGU01000013
[ODGU] human metagenome; G_DNA_Supragingival plaque
72745
72819
+
Trp
CCA
[ENA]
¢þ
>WENV180749839
ODHS01000041
[ODHS] human metagenome; G_DNA_Supragingival plaque
9874
9800
-
Trp
CCA
[ENA]
¢þ
>WENV180764787
ODIB01001158
[ODIB] human metagenome; G_DNA_Supragingival plaque
2148
2074
-
Trp
CCA
[ENA]
¢þ
>WENV180787242
ODIS01002518
[ODIS] human metagenome; G_DNA_Supragingival plaque
6275
6349
+
Trp
CCA
[ENA]
¢þ
>WENV180795745
ODJB01000235
[ODJB] human metagenome; G_DNA_Supragingival plaque
6611
6537
-
Trp
CCA
[ENA]
¢þ
>WENV180800532
ODJD01000103
[ODJD] human metagenome; G_DNA_Supragingival plaque
16851
16925
+
Trp
CCA
[ENA]
¢þ
>WENV180803645
ODJG01000009
[ODJG] human metagenome; G_DNA_Supragingival plaque
60367
60293
-
Trp
CCA
[ENA]
¢þ
>WENV180808398
ODJK01000016
[ODJK] human metagenome; G_DNA_Subgingival plaque
66109
66183
+
Trp
CCA
[ENA]
¢þ
>WENV180812917
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
411529
411603
+
Trp
CCA
[ENA]
¢þ
>WENV180823893
ODJX01000003
[ODJX] human metagenome; G_DNA_Supragingival plaque
121711
121785
+
Trp
CCA
[ENA]
¢þ
>WENV180834608
ODKD01066374
[ODKD] human metagenome; G_DNA_Supragingival plaque
195
269
+
Trp
CCA
[ENA]
¢þ
>WENV180835877
ODKE01017720
[ODKE] human metagenome; G_DNA_Supragingival plaque
492
566
+
Trp
CCA
[ENA]
¢þ
>WENV180846856
ODKT01026348
[ODKT] human metagenome; G_DNA_Supragingival plaque
632
706
+
Trp
CCA
[ENA]
¢þ
>WENV180859385
ODLD01000530
[ODLD] human metagenome; G_DNA_Supragingival plaque
16863
16937
+
Trp
CCA
[ENA]
¢þ
>WENV180887973
ODMN01000007
[ODMN] human metagenome; G_DNA_Supragingival plaque
96422
96496
+
Trp
CCA
[ENA]
¢þ
>WENV180921462
ODTJ01000065
[ODTJ] human metagenome; G_DNA_Supragingival plaque
28156
28082
-
Trp
CCA
[ENA]
¢þ
>WENV180924257
ODTK01002206
[ODTK] human metagenome; G_DNA_Supragingival plaque
4405
4479
+
Trp
CCA
[ENA]
¢þ
>WENV180937687
ODTX01000026
[ODTX] human metagenome; G_DNA_Supragingival plaque
60333
60259
-
Trp
CCA
[ENA]
¢þ
>WENV180943402
ODUC01000391
[ODUC] human metagenome; G_DNA_Supragingival plaque
20580
20654
+
Trp
CCA
[ENA]
¢þ
>WENV180980823
ODVE01002336
[ODVE] human metagenome; G_DNA_Supragingival plaque
361
435
+
Trp
CCA
[ENA]
¢þ
>WENV180982639
ODVF01000178
[ODVF] human metagenome; G_DNA_Supragingival plaque
37700
37774
+
Trp
CCA
[ENA]
¢þ
>WENV180998017
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
96422
96496
+
Trp
CCA
[ENA]
¢þ
>WENV181002019
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
94455
94529
+
Trp
CCA
[ENA]
¢þ
>WENV181007215
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
276439
276365
-
Trp
CCA
[ENA]
¢þ
>WENV181063016
ODYP01000026
[ODYP] human metagenome; G_DNA_Supragingival plaque
118950
119024
+
Trp
CCA
[ENA]
¢þ
>WENV181066386
ODZI01000006
[ODZI] human metagenome; G_DNA_Supragingival plaque
60365
60291
-
Trp
CCA
[ENA]
¢þ
>WENV181075941
OEAP01000845
[OEAP] human metagenome; G_DNA_Supragingival plaque
13932
14006
+
Trp
CCA
[ENA]
¢þ
>WENV181078490
OEAS01000097
[OEAS] human metagenome; G_DNA_Supragingival plaque
38405
38479
+
Trp
CCA
[ENA]
¢þ
>WENV181106658
OEEI01000016
[OEEI] human metagenome; G_DNA_Supragingival plaque
27088
27014
-
Trp
CCA
[ENA]
¢þ
>WENV181145688
OEHQ01000009
[OEHQ] human metagenome; G_DNA_Supragingival plaque
130885
130811
-
Trp
CCA
[ENA]
¢þ
>WENV181151996
OEIA01000009
[OEIA] human metagenome; G_DNA_Supragingival plaque
145470
145396
-
Trp
CCA
[ENA]
¢þ
>WENV080339
ABBX01000046
Oral TM7c microbial communities of Human
13154
13230
+
Trp
CCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK