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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653332 (28 seq.)
>w027320
ABBX01000012
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
115
39
-
Gly
CCC
[ENA]
¡û
>w027293
ABBV01002652
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
121
45
-
Gly
CCC
[ENA]
¡û
>WENV180726484
ODGU01000038
[ODGU] human metagenome; G_DNA_Supragingival plaque
3415
3341
-
Gly
CCC
[ENA]
¢þ
>WENV180749802
ODHS01000029
[ODHS] human metagenome; G_DNA_Supragingival plaque
16106
16032
-
Gly
CCC
[ENA]
¢þ
>WENV180764762
ODIB01000908
[ODIB] human metagenome; G_DNA_Supragingival plaque
4545
4619
+
Gly
CCC
[ENA]
¢þ
>WENV180795281
ODIZ01083269
[ODIZ] human metagenome; G_DNA_Tongue dorsum
94
168
+
Gly
CCC
[ENA]
¢þ
>WENV180800581
ODJD01000206
[ODJD] human metagenome; G_DNA_Supragingival plaque
19391
19317
-
Gly
CCC
[ENA]
¢þ
>WENV180803924
ODJG01000184
[ODJG] human metagenome; G_DNA_Supragingival plaque
30321
30395
+
Gly
CCC
[ENA]
¢þ
>WENV180808384
ODJK01000011
[ODJK] human metagenome; G_DNA_Subgingival plaque
38314
38240
-
Gly
CCC
[ENA]
¢þ
>WENV180813020
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
94138
94212
+
Gly
CCC
[ENA]
¢þ
>WENV180823925
ODJX01000011
[ODJX] human metagenome; G_DNA_Supragingival plaque
14251
14177
-
Gly
CCC
[ENA]
¢þ
>WENV180846853
ODKT01026080
[ODKT] human metagenome; G_DNA_Supragingival plaque
1183
1257
+
Gly
CCC
[ENA]
¢þ
>WENV180853547
ODKW01178508
[ODKW] human metagenome; G_DNA_Tongue dorsum
196
122
-
Gly
CCC
[ENA]
¢þ
>WENV180859219
ODLD01000086
[ODLD] human metagenome; G_DNA_Supragingival plaque
58959
58885
-
Gly
CCC
[ENA]
¢þ
>WENV180937789
ODTX01000075
[ODTX] human metagenome; G_DNA_Supragingival plaque
94134
94208
+
Gly
CCC
[ENA]
¢þ
>WENV180943890
ODUC01003673
[ODUC] human metagenome; G_DNA_Supragingival plaque
4090
4016
-
Gly
CCC
[ENA]
¢þ
>WENV180981048
ODVE01005802
[ODVE] human metagenome; G_DNA_Supragingival plaque
964
890
-
Gly
CCC
[ENA]
¢þ
>WENV180982537
ODVF01000068
[ODVF] human metagenome; G_DNA_Supragingival plaque
67758
67832
+
Gly
CCC
[ENA]
¢þ
>WENV181007217
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
119100
119026
-
Gly
CCC
[ENA]
¢þ
>WENV181066415
ODZI01000019
[ODZI] human metagenome; G_DNA_Supragingival plaque
92639
92713
+
Gly
CCC
[ENA]
¢þ
>WENV181075885
OEAP01000596
[OEAP] human metagenome; G_DNA_Supragingival plaque
8430
8504
+
Gly
CCC
[ENA]
¢þ
>WENV181078763
OEAS01000475
[OEAS] human metagenome; G_DNA_Supragingival plaque
20401
20475
+
Gly
CCC
[ENA]
¢þ
>WENV181106573
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
173748
173674
-
Gly
CCC
[ENA]
¢þ
>WENV181121461
OEFL01004569
[OEFL] human metagenome; G_DNA_Supragingival plaque
3739
3813
+
Gly
CCC
[ENA]
¢þ
>WENV181146001
OEHQ01000431
[OEHQ] human metagenome; G_DNA_Supragingival plaque
721
647
-
Gly
CCC
[ENA]
¢þ
>WENV183313414
OLVP01045408
[OLVP] human gut metagenome; faeces
207
133
-
Gly
CCC
[ENA]
¢þ
>WENV080304
ABBV01002652
Oral TM7a microbial communities of Human
121
45
-
Gly
CCC
[ENA]
>WENV080331
ABBX01000012
Oral TM7c microbial communities of Human
115
39
-
Gly
CCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK