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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72672 (39 seq.)
>w027339
ABBX01000106
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
1105
1195
+
Ser
CGA
[ENA]
¡û
>w027299
ABBV01003008
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
512
422
-
Ser
CGA
[ENA]
¡û
>WENV180726444
ODGU01000027
[ODGU] human metagenome; G_DNA_Supragingival plaque
15853
15941
+
Ser
CGA
[ENA]
¢þ
>WENV180739203
ODHD01014640
[ODHD] human metagenome; G_DNA_Supragingival plaque
738
826
+
Ser
CGA
[ENA]
¢þ
>WENV180749820
ODHS01000035
[ODHS] human metagenome; G_DNA_Supragingival plaque
18533
18621
+
Ser
CGA
[ENA]
¢þ
>WENV180764658
ODIB01000233
[ODIB] human metagenome; G_DNA_Supragingival plaque
329
241
-
Ser
CGA
[ENA]
¢þ
>WENV180787491
ODIS01007076
[ODIS] human metagenome; G_DNA_Supragingival plaque
3437
3349
-
Ser
CGA
[ENA]
¢þ
>WENV180795704
ODJB01000140
[ODJB] human metagenome; G_DNA_Supragingival plaque
36918
36830
-
Ser
CGA
[ENA]
¢þ
>WENV180800514
ODJD01000079
[ODJD] human metagenome; G_DNA_Supragingival plaque
30035
29947
-
Ser
CGA
[ENA]
¢þ
>WENV180803916
ODJG01000174
[ODJG] human metagenome; G_DNA_Supragingival plaque
15238
15326
+
Ser
CGA
[ENA]
¢þ
>WENV180808362
ODJK01000007
[ODJK] human metagenome; G_DNA_Subgingival plaque
55403
55491
+
Ser
CGA
[ENA]
¢þ
>WENV180812909
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
54483
54571
+
Ser
CGA
[ENA]
¢þ
>WENV180823904
ODJX01000005
[ODJX] human metagenome; G_DNA_Supragingival plaque
86540
86452
-
Ser
CGA
[ENA]
¢þ
>WENV180847538
ODKT01102169
[ODKT] human metagenome; G_DNA_Supragingival plaque
74
162
+
Ser
CGA
[ENA]
¢þ
>WENV180859787
ODLD01004572
[ODLD] human metagenome; G_DNA_Supragingival plaque
160
72
-
Ser
CGA
[ENA]
¢þ
>WENV180888014
ODMN01000014
[ODMN] human metagenome; G_DNA_Supragingival plaque
84575
84487
-
Ser
CGA
[ENA]
¢þ
>WENV180921490
ODTJ01000075
[ODTJ] human metagenome; G_DNA_Supragingival plaque
55118
55206
+
Ser
CGA
[ENA]
¢þ
>WENV180923588
ODTK01000030
[ODTK] human metagenome; G_DNA_Supragingival plaque
84590
84502
-
Ser
CGA
[ENA]
¢þ
>WENV180937719
ODTX01000038
[ODTX] human metagenome; G_DNA_Supragingival plaque
85250
85162
-
Ser
CGA
[ENA]
¢þ
>WENV180943225
ODUC01000040
[ODUC] human metagenome; G_DNA_Supragingival plaque
37510
37598
+
Ser
CGA
[ENA]
¢þ
>WENV180976422
ODUY01103792
[ODUY] human metagenome; G_DNA_Supragingival plaque
98
10
-
Ser
CGA
[ENA]
¢þ
>WENV180980894
ODVE01003171
[ODVE] human metagenome; G_DNA_Supragingival plaque
3934
3846
-
Ser
CGA
[ENA]
¢þ
>WENV180982488
ODVF01000038
[ODVF] human metagenome; G_DNA_Supragingival plaque
73167
73079
-
Ser
CGA
[ENA]
¢þ
>WENV180998068
ODVT01000006
[ODVT] human metagenome; G_DNA_Buccal mucosa
85198
85110
-
Ser
CGA
[ENA]
¢þ
>WENV181002011
ODVX01000002
[ODVX] human metagenome; G_DNA_Supragingival plaque
263200
263112
-
Ser
CGA
[ENA]
¢þ
>WENV181007264
ODWE01000009
[ODWE] human metagenome; G_DNA_Supragingival plaque
150204
150292
+
Ser
CGA
[ENA]
¢þ
>WENV181062976
ODYP01000018
[ODYP] human metagenome; G_DNA_Supragingival plaque
91092
91004
-
Ser
CGA
[ENA]
¢þ
>WENV181066406
ODZI01000017
[ODZI] human metagenome; G_DNA_Supragingival plaque
16917
17005
+
Ser
CGA
[ENA]
¢þ
>WENV181075800
OEAP01000313
[OEAP] human metagenome; G_DNA_Supragingival plaque
18216
18304
+
Ser
CGA
[ENA]
¢þ
>WENV181078332
OEAS01000012
[OEAS] human metagenome; G_DNA_Supragingival plaque
85277
85189
-
Ser
CGA
[ENA]
¢þ
>WENV181106591
OEEI01000004
[OEEI] human metagenome; G_DNA_Supragingival plaque
248940
248852
-
Ser
CGA
[ENA]
¢þ
>WENV181121208
OEFL01001373
[OEFL] human metagenome; G_DNA_Supragingival plaque
191
103
-
Ser
CGA
[ENA]
¢þ
>WENV181138171
OEGJ01144234
[OEGJ] human metagenome; G_DNA_Supragingival plaque
124
212
+
Ser
CGA
[ENA]
¢þ
>WENV181145724
OEHQ01000029
[OEHQ] human metagenome; G_DNA_Supragingival plaque
60754
60666
-
Ser
CGA
[ENA]
¢þ
>WENV181152029
OEIA01000029
[OEIA] human metagenome; G_DNA_Supragingival plaque
65370
65458
+
Ser
CGA
[ENA]
¢þ
>WENV183510031
OMHL01003075
[OMHL] human oral metagenome; human oral
41
129
+
Ser
CGA
[ENA]
¢þ
>WENV183510781
OMHQ01012408
[OMHQ] human oral metagenome; human oral
141
229
+
Ser
CGA
[ENA]
¢þ
>WENV080309
ABBV01003008
Oral TM7a microbial communities of Human
512
422
-
Ser
CGA
[ENA]
>WENV080350
ABBX01000106
Oral TM7c microbial communities of Human
1105
1195
+
Ser
CGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK