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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451326 (111 seq.)
>w027321
ABBX01000014
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
237
312
+
Thr
CGT
[ENA]
¡û
>WENV180004278
FLRR01059486
[FLRR] metagenome; saliva
43
118
+
Thr
CGT
[ENA]
¢þ
>WENV180005124
FLRT01158691
[FLRT] metagenome; saliva
136
61
-
Thr
CGT
[ENA]
¢þ
>WENV180005274
FLRW01001768
[FLRW] metagenome; saliva
4378
4303
-
Thr
CGT
[ENA]
¢þ
>WENV180006985
FLRZ01053473
[FLRZ] metagenome; saliva
553
478
-
Thr
CGT
[ENA]
¢þ
>WENV180007671
FLSA01168266
[FLSA] metagenome; saliva
495
420
-
Thr
CGT
[ENA]
¢þ
>WENV180007817
FLSB01000072
[FLSB] metagenome; saliva
3172
3097
-
Thr
CGT
[ENA]
¢þ
>WENV180009941
FLSC01187707
[FLSC] metagenome; saliva
202
127
-
Thr
CGT
[ENA]
¢þ
>WENV180010637
FLSD01031901
[FLSD] metagenome; saliva
312
237
-
Thr
CGT
[ENA]
¢þ
>WENV180011280
FLSK01000973
[FLSK] metagenome; saliva
11449
11524
+
Thr
CGT
[ENA]
¢þ
>WENV180225773
OBBP01000003
[OBBP] human oral metagenome; human oral
101738
101663
-
Thr
CGT
[ENA]
¢þ
>WENV180704944
ODEJ01000324
[ODEJ] human metagenome; G_DNA_Tongue dorsum
23887
23812
-
Thr
CGT
[ENA]
¢þ
>WENV180704947
ODEJ01000326
[ODEJ] human metagenome; G_DNA_Tongue dorsum
23720
23645
-
Thr
CGT
[ENA]
¢þ
>WENV180707670
ODFJ01000002
[ODFJ] human metagenome; G_DNA_Tongue dorsum
162595
162670
+
Thr
CGT
[ENA]
¢þ
>WENV180720055
ODGJ01014702
[ODGJ] human metagenome; G_DNA_Tongue dorsum
685
760
+
Thr
CGT
[ENA]
¢þ
>WENV180721014
ODGK01001077
[ODGK] human metagenome; G_DNA_Palatine Tonsils
451
526
+
Thr
CGT
[ENA]
¢þ
>WENV180723961
ODGR01000003
[ODGR] human metagenome; G_DNA_Tongue dorsum
222154
222079
-
Thr
CGT
[ENA]
¢þ
>WENV180758188
ODHW01010055
[ODHW] human metagenome; G_DNA_Tongue dorsum
577
652
+
Thr
CGT
[ENA]
¢þ
>WENV180759534
ODHY01030280
[ODHY] human metagenome; G_DNA_Buccal mucosa
92
17
-
Thr
CGT
[ENA]
¢þ
>WENV180763133
ODIA01000125
[ODIA] human metagenome; G_DNA_Tongue dorsum
40303
40378
+
Thr
CGT
[ENA]
¢þ
>WENV180768447
ODIG01007218
[ODIG] human metagenome; G_DNA_Tongue dorsum
1513
1438
-
Thr
CGT
[ENA]
¢þ
>WENV180773323
ODIJ01000049
[ODIJ] human metagenome; G_DNA_Tongue dorsum
44855
44780
-
Thr
CGT
[ENA]
¢þ
>WENV180775775
ODIK01004039
[ODIK] human metagenome; G_DNA_Tongue dorsum
3076
3151
+
Thr
CGT
[ENA]
¢þ
>WENV180782856
ODIQ01000275
[ODIQ] human metagenome; G_DNA_Tongue dorsum
24806
24731
-
Thr
CGT
[ENA]
¢þ
>WENV180783862
ODIQ01037718
[ODIQ] human metagenome; G_DNA_Tongue dorsum
131
206
+
Thr
CGT
[ENA]
¢þ
>WENV180786714
ODIS01000074
[ODIS] human metagenome; G_DNA_Supragingival plaque
25839
25914
+
Thr
CGT
[ENA]
¢þ
>WENV180790038
ODIT01002978
[ODIT] human metagenome; G_DNA_Tongue dorsum
1051
976
-
Thr
CGT
[ENA]
¢þ
>WENV180792608
ODIW01001058
[ODIW] human metagenome; G_DNA_Tongue dorsum
2625
2550
-
Thr
CGT
[ENA]
¢þ
>WENV180794754
ODIZ01004951
[ODIZ] human metagenome; G_DNA_Tongue dorsum
1552
1477
-
Thr
CGT
[ENA]
¢þ
>WENV180801793
ODJD01189128
[ODJD] human metagenome; G_DNA_Supragingival plaque
136
61
-
Thr
CGT
[ENA]
¢þ
>WENV180802325
ODJE01001140
[ODJE] human metagenome; G_DNA_Tongue dorsum
6296
6371
+
Thr
CGT
[ENA]
¢þ
>WENV180805552
ODJH01000041
[ODJH] human metagenome; G_DNA_Tongue dorsum
50643
50718
+
Thr
CGT
[ENA]
¢þ
>WENV180807707
ODJI01007429
[ODJI] human metagenome; G_DNA_Tongue dorsum
88
13
-
Thr
CGT
[ENA]
¢þ
>WENV180809259
ODJK01008781
[ODJK] human metagenome; G_DNA_Subgingival plaque
649
724
+
Thr
CGT
[ENA]
¢þ
>WENV180816180
ODJP01005575
[ODJP] human metagenome; G_DNA_Tongue dorsum
4075
4000
-
Thr
CGT
[ENA]
¢þ
>WENV180819678
ODJR01000308
[ODJR] human metagenome; G_DNA_Tongue dorsum
18910
18835
-
Thr
CGT
[ENA]
¢þ
>WENV180820226
ODJR01003042
[ODJR] human metagenome; G_DNA_Tongue dorsum
2117
2192
+
Thr
CGT
[ENA]
¢þ
>WENV180821355
ODJS01005916
[ODJS] human metagenome; G_DNA_Tongue dorsum
1787
1712
-
Thr
CGT
[ENA]
¢þ
>WENV180830394
ODKB01002547
[ODKB] human metagenome; G_DNA_Tongue dorsum
1021
946
-
Thr
CGT
[ENA]
¢þ
>WENV180832044
ODKC01000379
[ODKC] human metagenome; G_DNA_Supragingival plaque
11851
11776
-
Thr
CGT
[ENA]
¢þ
>WENV180844602
ODKN01233370
[ODKN] human metagenome; G_DNA_Supragingival plaque
75
1
-
Thr
CGT
[ENA]
¢þ
>WENV180845412
ODKT01000325
[ODKT] human metagenome; G_DNA_Supragingival plaque
23743
23668
-
Thr
CGT
[ENA]
¢þ
>WENV180852479
ODKW01001387
[ODKW] human metagenome; G_DNA_Tongue dorsum
2965
2890
-
Thr
CGT
[ENA]
¢þ
>WENV180853363
ODKW01078987
[ODKW] human metagenome; G_DNA_Tongue dorsum
273
198
-
Thr
CGT
[ENA]
¢þ
>WENV180856418
ODKZ01014739
[ODKZ] human metagenome; G_DNA_Tongue dorsum
88
13
-
Thr
CGT
[ENA]
¢þ
>WENV180857876
ODLC01000120
[ODLC] human metagenome; G_DNA_Tongue dorsum
37173
37248
+
Thr
CGT
[ENA]
¢þ
>WENV180860615
ODLE01000001
[ODLE] human metagenome; G_DNA_Tongue dorsum
237323
237248
-
Thr
CGT
[ENA]
¢þ
>WENV180863829
ODLH01002740
[ODLH] human metagenome; G_DNA_Tongue dorsum
2643
2568
-
Thr
CGT
[ENA]
¢þ
>WENV180873523
ODLP01008858
[ODLP] human metagenome; G_DNA_Tongue dorsum
191
266
+
Thr
CGT
[ENA]
¢þ
>WENV180874685
ODLQ01003391
[ODLQ] human metagenome; G_DNA_Tongue dorsum
1662
1737
+
Thr
CGT
[ENA]
¢þ
>WENV180877811
ODLV01002790
[ODLV] human metagenome; G_DNA_Tongue dorsum
2940
2865
-
Thr
CGT
[ENA]
¢þ
>WENV180877831
ODLV01003157
[ODLV] human metagenome; G_DNA_Tongue dorsum
2576
2501
-
Thr
CGT
[ENA]
¢þ
>WENV180883098
ODMC01001728
[ODMC] human metagenome; G_DNA_Tongue dorsum
518
593
+
Thr
CGT
[ENA]
¢þ
>WENV180888156
ODMN01000112
[ODMN] human metagenome; G_DNA_Supragingival plaque
29034
29109
+
Thr
CGT
[ENA]
¢þ
>WENV180890680
ODMO01008660
[ODMO] human metagenome; G_DNA_Tongue dorsum
583
658
+
Thr
CGT
[ENA]
¢þ
>WENV180896211
ODNI01000197
[ODNI] human metagenome; G_DNA_Tongue dorsum
48184
48259
+
Thr
CGT
[ENA]
¢þ
>WENV180899780
ODOJ01000031
[ODOJ] human metagenome; G_DNA_Tongue dorsum
31998
31923
-
Thr
CGT
[ENA]
¢þ
>WENV180901828
ODOK01004750
[ODOK] human metagenome; G_DNA_Tongue dorsum
1845
1920
+
Thr
CGT
[ENA]
¢þ
>WENV180916769
ODTD01001048
[ODTD] human metagenome; G_DNA_Tongue dorsum
8129
8054
-
Thr
CGT
[ENA]
¢þ
>WENV180917260
ODTD01009533
[ODTD] human metagenome; G_DNA_Tongue dorsum
502
577
+
Thr
CGT
[ENA]
¢þ
>WENV180919855
ODTH01000287
[ODTH] human metagenome; G_DNA_Tongue dorsum
30979
31054
+
Thr
CGT
[ENA]
¢þ
>WENV180932248
ODTP01035814
[ODTP] human metagenome; G_DNA_Tongue dorsum
820
745
-
Thr
CGT
[ENA]
¢þ
>WENV180946405
ODUD01070666
[ODUD] human metagenome; G_DNA_Tongue dorsum
87
162
+
Thr
CGT
[ENA]
¢þ
>WENV180948752
ODUG01003474
[ODUG] human metagenome; G_DNA_Tongue dorsum
6246
6321
+
Thr
CGT
[ENA]
¢þ
>WENV180950740
ODUH01001198
[ODUH] human metagenome; G_DNA_Subgingival plaque
1299
1374
+
Thr
CGT
[ENA]
¢þ
>WENV180954402
ODUJ01002373
[ODUJ] human metagenome; G_DNA_Tongue dorsum
2975
2900
-
Thr
CGT
[ENA]
¢þ
>WENV180960007
ODUM01007192
[ODUM] human metagenome; G_DNA_Tongue dorsum
236
311
+
Thr
CGT
[ENA]
¢þ
>WENV180977269
ODUZ01000172
[ODUZ] human metagenome; G_DNA_Tongue dorsum
2965
2890
-
Thr
CGT
[ENA]
¢þ
>WENV180982127
ODVE01157994
[ODVE] human metagenome; G_DNA_Supragingival plaque
221
296
+
Thr
CGT
[ENA]
¢þ
>WENV180984029
ODVF01084997
[ODVF] human metagenome; G_DNA_Supragingival plaque
444
369
-
Thr
CGT
[ENA]
¢þ
>WENV180985560
ODVJ01008179
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2147
2222
+
Thr
CGT
[ENA]
¢þ
>WENV180987633
ODVK01057838
[ODVK] human metagenome; G_DNA_Supragingival plaque
381
306
-
Thr
CGT
[ENA]
¢þ
>WENV180989877
ODVN01000151
[ODVN] human metagenome; G_DNA_Tongue dorsum
59771
59696
-
Thr
CGT
[ENA]
¢þ
>WENV180998489
ODVT01000533
[ODVT] human metagenome; G_DNA_Buccal mucosa
25765
25690
-
Thr
CGT
[ENA]
¢þ
>WENV181009699
ODWE01156443
[ODWE] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
CGT
[ENA]
¢þ
>WENV181020150
ODWU01062690
[ODWU] human metagenome; G_DNA_Supragingival plaque
392
467
+
Thr
CGT
[ENA]
¢þ
>WENV181021137
ODWV01002667
[ODWV] human metagenome; G_DNA_Tongue dorsum
5600
5525
-
Thr
CGT
[ENA]
¢þ
>WENV181033552
ODXN01011084
[ODXN] human metagenome; G_DNA_Tongue dorsum
414
339
-
Thr
CGT
[ENA]
¢þ
>WENV181034173
ODXN01101373
[ODXN] human metagenome; G_DNA_Tongue dorsum
158
233
+
Thr
CGT
[ENA]
¢þ
>WENV181039029
ODXQ01008429
[ODXQ] human metagenome; G_DNA_Tongue dorsum
3145
3220
+
Thr
CGT
[ENA]
¢þ
>WENV181044966
ODXV01078020
[ODXV] human metagenome; G_DNA_Tongue dorsum
232
157
-
Thr
CGT
[ENA]
¢þ
>WENV181045187
ODXW01000019
[ODXW] human metagenome; G_DNA_Tongue dorsum
133038
133113
+
Thr
CGT
[ENA]
¢þ
>WENV181052762
ODYG01023718
[ODYG] human metagenome; G_DNA_Tongue dorsum
285
210
-
Thr
CGT
[ENA]
¢þ
>WENV181058256
ODYL01006159
[ODYL] human metagenome; G_DNA_Tongue dorsum
4198
4123
-
Thr
CGT
[ENA]
¢þ
>WENV181058624
ODYL01021421
[ODYL] human metagenome; G_DNA_Tongue dorsum
498
573
+
Thr
CGT
[ENA]
¢þ
>WENV181059823
ODYM01012730
[ODYM] human metagenome; G_DNA_Tongue dorsum
832
757
-
Thr
CGT
[ENA]
¢þ
>WENV181063254
ODYP01000280
[ODYP] human metagenome; G_DNA_Supragingival plaque
11720
11645
-
Thr
CGT
[ENA]
¢þ
>WENV181068869
ODZZ01004103
[ODZZ] human metagenome; G_DNA_Tongue dorsum
2804
2729
-
Thr
CGT
[ENA]
¢þ
>WENV181074161
OEAO01003888
[OEAO] human metagenome; G_DNA_Tongue dorsum
6777
6702
-
Thr
CGT
[ENA]
¢þ
>WENV181078639
OEAS01000206
[OEAS] human metagenome; G_DNA_Supragingival plaque
20420
20345
-
Thr
CGT
[ENA]
¢þ
>WENV181086934
OEAY01006132
[OEAY] human metagenome; G_DNA_Tongue dorsum
148
73
-
Thr
CGT
[ENA]
¢þ
>WENV181094338
OEBY01000085
[OEBY] human metagenome; G_DNA_Tongue dorsum
12669
12744
+
Thr
CGT
[ENA]
¢þ
>WENV181097451
OECA01009372
[OECA] human metagenome; G_DNA_Tongue dorsum
2483
2558
+
Thr
CGT
[ENA]
¢þ
>WENV181104603
OEED01000008
[OEED] human metagenome; G_DNA_Tongue dorsum
179484
179559
+
Thr
CGT
[ENA]
¢þ
>WENV181108366
OEEJ01000012
[OEEJ] human metagenome; G_DNA_Tongue dorsum
37076
37151
+
Thr
CGT
[ENA]
¢þ
>WENV181113996
OEEO01000030
[OEEO] human metagenome; G_DNA_Supragingival plaque
110659
110734
+
Thr
CGT
[ENA]
¢þ
>WENV181130231
OEFY01003301
[OEFY] human metagenome; G_DNA_Throat
1169
1244
+
Thr
CGT
[ENA]
¢þ
>WENV181130287
OEFY01004551
[OEFY] human metagenome; G_DNA_Throat
490
565
+
Thr
CGT
[ENA]
¢þ
>WENV181136514
OEGI01011957
[OEGI] human metagenome; G_DNA_Supragingival plaque
828
903
+
Thr
CGT
[ENA]
¢þ
>WENV181139383
OEGN01007515
[OEGN] human metagenome; G_DNA_Tongue dorsum
880
805
-
Thr
CGT
[ENA]
¢þ
>WENV181140775
OEGT01000125
[OEGT] human metagenome; G_DNA_Throat
25109
25034
-
Thr
CGT
[ENA]
¢þ
>WENV181157289
OEIG01001572
[OEIG] human metagenome; G_DNA_Hard palate
6811
6736
-
Thr
CGT
[ENA]
¢þ
>WENV181160700
OEIK01025599
[OEIK] human metagenome; G_DNA_Supragingival plaque
596
521
-
Thr
CGT
[ENA]
¢þ
>WENV181176374
OEJR01002048
[OEJR] human metagenome; G_DNA_Saliva
1150
1225
+
Thr
CGT
[ENA]
¢þ
>WENV181917409
OGYG01015415
[OGYG] human gut metagenome; faeces
193
268
+
Thr
CGT
[ENA]
¢þ
>WENV181919871
OGYI01004436
[OGYI] human gut metagenome; faeces
2827
2752
-
Thr
CGT
[ENA]
¢þ
>WENV181953288
OGZI01004620
[OGZI] human gut metagenome; faeces
7680
7605
-
Thr
CGT
[ENA]
¢þ
>WENV182164883
OHMN01004841
[OHMN] human gut metagenome; faeces
2903
2828
-
Thr
CGT
[ENA]
¢þ
>C191173910
CP040011
Unclassified
TM7 phylum sp. oral taxon 952 TM7x [CP040011]
94144
94219
+
Thr
CGT
-
¡û
>C151025480
CP007496
Unclassified
Candidatus Nanosynbacter lyticus TM7x [CP007496]
94145
94220
+
Thr
CGT
[Ensembl]
¡û
>WENV080332
ABBX01000014
Oral TM7c microbial communities of Human
237
312
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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