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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653333 (40 seq.)
>w027332
ABBX01000060
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
222
298
+
Glu
CTC
[ENA]
¡û
>w027285
ABBV01000903
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
1517
1441
-
Glu
CTC
[ENA]
¡û
>w027282
ABBV01000608
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
6555
6479
-
Glu
CTC
[ENA]
¡û
>WENV180727281
ODGU01003844
[ODGU] human metagenome; G_DNA_Supragingival plaque
1141
1067
-
Glu
CTC
[ENA]
¢þ
>WENV180731858
ODGW01023066
[ODGW] human metagenome; G_DNA_Supragingival plaque
388
462
+
Glu
CTC
[ENA]
¢þ
>WENV180739205
ODHD01014897
[ODHD] human metagenome; G_DNA_Supragingival plaque
894
820
-
Glu
CTC
[ENA]
¢þ
>WENV180749835
ODHS01000041
[ODHS] human metagenome; G_DNA_Supragingival plaque
85833
85907
+
Glu
CTC
[ENA]
¢þ
>WENV180787181
ODIS01001962
[ODIS] human metagenome; G_DNA_Supragingival plaque
139
65
-
Glu
CTC
[ENA]
¢þ
>WENV180795999
ODJB01000917
[ODJB] human metagenome; G_DNA_Supragingival plaque
16944
17018
+
Glu
CTC
[ENA]
¢þ
>WENV180800690
ODJD01000463
[ODJD] human metagenome; G_DNA_Supragingival plaque
13695
13621
-
Glu
CTC
[ENA]
¢þ
>WENV180803641
ODJG01000009
[ODJG] human metagenome; G_DNA_Supragingival plaque
136021
136095
+
Glu
CTC
[ENA]
¢þ
>WENV180808799
ODJK01001104
[ODJK] human metagenome; G_DNA_Subgingival plaque
9459
9533
+
Glu
CTC
[ENA]
¢þ
>WENV180812922
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
335875
335801
-
Glu
CTC
[ENA]
¢þ
>WENV180823897
ODJX01000003
[ODJX] human metagenome; G_DNA_Supragingival plaque
45589
45515
-
Glu
CTC
[ENA]
¢þ
>WENV180834693
ODKD01114310
[ODKD] human metagenome; G_DNA_Supragingival plaque
236
162
-
Glu
CTC
[ENA]
¢þ
>WENV180847321
ODKT01063196
[ODKT] human metagenome; G_DNA_Supragingival plaque
231
305
+
Glu
CTC
[ENA]
¢þ
>WENV180859363
ODLD01000494
[ODLD] human metagenome; G_DNA_Supragingival plaque
10262
10336
+
Glu
CTC
[ENA]
¢þ
>WENV180887986
ODMN01000007
[ODMN] human metagenome; G_DNA_Supragingival plaque
17549
17475
-
Glu
CTC
[ENA]
¢þ
>WENV180921458
ODTJ01000065
[ODTJ] human metagenome; G_DNA_Supragingival plaque
105459
105533
+
Glu
CTC
[ENA]
¢þ
>WENV180924142
ODTK01001388
[ODTK] human metagenome; G_DNA_Supragingival plaque
10242
10316
+
Glu
CTC
[ENA]
¢þ
>WENV180937683
ODTX01000026
[ODTX] human metagenome; G_DNA_Supragingival plaque
135987
136061
+
Glu
CTC
[ENA]
¢þ
>WENV180943426
ODUC01000480
[ODUC] human metagenome; G_DNA_Supragingival plaque
9478
9552
+
Glu
CTC
[ENA]
¢þ
>WENV180982711
ODVF01000360
[ODVF] human metagenome; G_DNA_Supragingival plaque
17567
17641
+
Glu
CTC
[ENA]
¢þ
>WENV180998038
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
17549
17475
-
Glu
CTC
[ENA]
¢þ
>WENV181002041
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
19863
19789
-
Glu
CTC
[ENA]
¢þ
>WENV181007990
ODWE01001467
[ODWE] human metagenome; G_DNA_Supragingival plaque
7188
7262
+
Glu
CTC
[ENA]
¢þ
>WENV181063019
ODYP01000026
[ODYP] human metagenome; G_DNA_Supragingival plaque
42920
42846
-
Glu
CTC
[ENA]
¢þ
>WENV181066383
ODZI01000006
[ODZI] human metagenome; G_DNA_Supragingival plaque
135534
135608
+
Glu
CTC
[ENA]
¢þ
>WENV181076280
OEAP01003206
[OEAP] human metagenome; G_DNA_Supragingival plaque
779
705
-
Glu
CTC
[ENA]
¢þ
>WENV181078619
OEAS01000192
[OEAS] human metagenome; G_DNA_Supragingival plaque
3956
3882
-
Glu
CTC
[ENA]
¢þ
>WENV181092184
OEBC01313029
[OEBC] human metagenome; G_DNA_Supragingival plaque
225
151
-
Glu
CTC
[ENA]
¢þ
>WENV181106654
OEEI01000016
[OEEI] human metagenome; G_DNA_Supragingival plaque
102742
102816
+
Glu
CTC
[ENA]
¢þ
>WENV181121217
OEFL01001451
[OEFL] human metagenome; G_DNA_Supragingival plaque
2834
2908
+
Glu
CTC
[ENA]
¢þ
>WENV181137770
OEGJ01023410
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1044
1118
+
Glu
CTC
[ENA]
¢þ
>WENV181145828
OEHQ01000123
[OEHQ] human metagenome; G_DNA_Supragingival plaque
39681
39755
+
Glu
CTC
[ENA]
¢þ
>WENV181152155
OEIA01000205
[OEIA] human metagenome; G_DNA_Supragingival plaque
15890
15816
-
Glu
CTC
[ENA]
¢þ
>WENV170726233
LSQX01371969
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
93225
93151
-
Glu
CTC
[ENA]
¢þ
>WENV080293
ABBV01000608
Oral TM7a microbial communities of Human
6555
6479
-
Glu
CTC
[ENA]
>WENV080296
ABBV01000903
Oral TM7a microbial communities of Human
1517
1441
-
Glu
CTC
[ENA]
>WENV080343
ABBX01000060
Oral TM7c microbial communities of Human
222
298
+
Glu
CTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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