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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270389 (34 seq.)
>w027342
ABBX01000127
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
30334
30256
-
Lys
CTT
[ENA]
¡û
>WENV180726472
ODGU01000036
[ODGU] human metagenome; G_DNA_Supragingival plaque
56812
56736
-
Lys
CTT
[ENA]
¢þ
>WENV180749827
ODHS01000036
[ODHS] human metagenome; G_DNA_Supragingival plaque
45991
46067
+
Lys
CTT
[ENA]
¢þ
>WENV180764914
ODIB01005288
[ODIB] human metagenome; G_DNA_Supragingival plaque
1869
1793
-
Lys
CTT
[ENA]
¢þ
>WENV180778772
ODIM01085649
[ODIM] human metagenome; G_DNA_Supragingival plaque
211
135
-
Lys
CTT
[ENA]
¢þ
>WENV180787852
ODIS01019029
[ODIS] human metagenome; G_DNA_Supragingival plaque
1579
1503
-
Lys
CTT
[ENA]
¢þ
>WENV180795621
ODJB01000080
[ODJB] human metagenome; G_DNA_Supragingival plaque
52321
52245
-
Lys
CTT
[ENA]
¢þ
>WENV180800452
ODJD01000026
[ODJD] human metagenome; G_DNA_Supragingival plaque
41778
41854
+
Lys
CTT
[ENA]
¢þ
>WENV180803792
ODJG01000063
[ODJG] human metagenome; G_DNA_Supragingival plaque
5374
5450
+
Lys
CTT
[ENA]
¢þ
>WENV180808406
ODJK01000021
[ODJK] human metagenome; G_DNA_Subgingival plaque
24182
24258
+
Lys
CTT
[ENA]
¢þ
>WENV180813026
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
157187
157263
+
Lys
CTT
[ENA]
¢þ
>WENV180823932
ODJX01000013
[ODJX] human metagenome; G_DNA_Supragingival plaque
48249
48325
+
Lys
CTT
[ENA]
¢þ
>WENV180859327
ODLD01000343
[ODLD] human metagenome; G_DNA_Supragingival plaque
29348
29272
-
Lys
CTT
[ENA]
¢þ
>WENV180875428
ODLQ01159919
[ODLQ] human metagenome; G_DNA_Tongue dorsum
39
115
+
Lys
CTT
[ENA]
¢þ
>WENV180888070
ODMN01000037
[ODMN] human metagenome; G_DNA_Supragingival plaque
55948
55872
-
Lys
CTT
[ENA]
¢þ
>WENV180921510
ODTJ01000091
[ODTJ] human metagenome; G_DNA_Supragingival plaque
66291
66215
-
Lys
CTT
[ENA]
¢þ
>WENV180937670
ODTX01000024
[ODTX] human metagenome; G_DNA_Supragingival plaque
47348
47424
+
Lys
CTT
[ENA]
¢þ
>WENV180943249
ODUC01000065
[ODUC] human metagenome; G_DNA_Supragingival plaque
5314
5390
+
Lys
CTT
[ENA]
¢þ
>WENV180980718
ODVE01001354
[ODVE] human metagenome; G_DNA_Supragingival plaque
3256
3332
+
Lys
CTT
[ENA]
¢þ
>WENV180982520
ODVF01000055
[ODVF] human metagenome; G_DNA_Supragingival plaque
24011
24087
+
Lys
CTT
[ENA]
¢þ
>WENV180998026
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
312605
312681
+
Lys
CTT
[ENA]
¢þ
>WENV181002029
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
315090
315166
+
Lys
CTT
[ENA]
¢þ
>WENV181007223
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
56812
56736
-
Lys
CTT
[ENA]
¢þ
>WENV181062988
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
73069
73145
+
Lys
CTT
[ENA]
¢þ
>WENV181066460
ODZI01000052
[ODZI] human metagenome; G_DNA_Supragingival plaque
47424
47500
+
Lys
CTT
[ENA]
¢þ
>WENV181076309
OEAP01003576
[OEAP] human metagenome; G_DNA_Supragingival plaque
5721
5645
-
Lys
CTT
[ENA]
¢þ
>WENV181078433
OEAS01000066
[OEAS] human metagenome; G_DNA_Supragingival plaque
56789
56713
-
Lys
CTT
[ENA]
¢þ
>WENV181084079
OEAV01059392
[OEAV] human metagenome; G_DNA_Supragingival plaque
7
83
+
Lys
CTT
[ENA]
¢þ
>WENV181106579
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
110696
110620
-
Lys
CTT
[ENA]
¢þ
>WENV181121068
OEFL01000341
[OEFL] human metagenome; G_DNA_Supragingival plaque
4269
4345
+
Lys
CTT
[ENA]
¢þ
>WENV181137930
OEGJ01046348
[OEGJ] human metagenome; G_DNA_Supragingival plaque
619
543
-
Lys
CTT
[ENA]
¢þ
>WENV181145959
OEHQ01000318
[OEHQ] human metagenome; G_DNA_Supragingival plaque
24728
24804
+
Lys
CTT
[ENA]
¢þ
>WENV181152092
OEIA01000086
[OEIA] human metagenome; G_DNA_Supragingival plaque
38740
38664
-
Lys
CTT
[ENA]
¢þ
>WENV080355
ABBX01000127
Oral TM7c microbial communities of Human
30334
30256
-
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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