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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779377 (42 seq.)
>w027314
ABBX01000006
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
1639
1712
+
Cys
GCA
[ENA]
¡û
>w027276
ABBV01000053
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
721
651
-
Cys
GCA
[ENA]
¡û
>WENV180726990
ODGU01001425
[ODGU] human metagenome; G_DNA_Supragingival plaque
781
854
+
Cys
GCA
[ENA]
¢þ
>WENV180739158
ODHD01009972
[ODHD] human metagenome; G_DNA_Supragingival plaque
989
1062
+
Cys
GCA
[ENA]
¢þ
>WENV180749803
ODHS01000029
[ODHS] human metagenome; G_DNA_Supragingival plaque
11506
11433
-
Cys
GCA
[ENA]
¢þ
>WENV180765318
ODIB01086166
[ODIB] human metagenome; G_DNA_Supragingival plaque
178
251
+
Cys
GCA
[ENA]
¢þ
>WENV180778706
ODIM01047941
[ODIM] human metagenome; G_DNA_Supragingival plaque
109
182
+
Cys
GCA
[ENA]
¢þ
>WENV180787778
ODIS01014897
[ODIS] human metagenome; G_DNA_Supragingival plaque
611
538
-
Cys
GCA
[ENA]
¢þ
>WENV180795936
ODJB01000644
[ODJB] human metagenome; G_DNA_Supragingival plaque
8746
8673
-
Cys
GCA
[ENA]
¢þ
>WENV180800582
ODJD01000206
[ODJD] human metagenome; G_DNA_Supragingival plaque
14792
14719
-
Cys
GCA
[ENA]
¢þ
>WENV180803925
ODJG01000184
[ODJG] human metagenome; G_DNA_Supragingival plaque
36531
36604
+
Cys
GCA
[ENA]
¢þ
>WENV180808385
ODJK01000011
[ODJK] human metagenome; G_DNA_Subgingival plaque
32569
32496
-
Cys
GCA
[ENA]
¢þ
>WENV180813021
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
100348
100421
+
Cys
GCA
[ENA]
¢þ
>WENV180823926
ODJX01000011
[ODJX] human metagenome; G_DNA_Supragingival plaque
8506
8433
-
Cys
GCA
[ENA]
¢þ
>WENV180859220
ODLD01000086
[ODLD] human metagenome; G_DNA_Supragingival plaque
19158
19085
-
Cys
GCA
[ENA]
¢þ
>WENV180887977
ODMN01000007
[ODMN] human metagenome; G_DNA_Supragingival plaque
253118
253191
+
Cys
GCA
[ENA]
¢þ
>WENV180921774
ODTJ01000385
[ODTJ] human metagenome; G_DNA_Supragingival plaque
34766
34839
+
Cys
GCA
[ENA]
¢þ
>WENV180924192
ODTK01001756
[ODTK] human metagenome; G_DNA_Supragingival plaque
2316
2389
+
Cys
GCA
[ENA]
¢þ
>WENV180937790
ODTX01000075
[ODTX] human metagenome; G_DNA_Supragingival plaque
100344
100417
+
Cys
GCA
[ENA]
¢þ
>WENV180943789
ODUC01002585
[ODUC] human metagenome; G_DNA_Supragingival plaque
8071
8144
+
Cys
GCA
[ENA]
¢þ
>WENV180980879
ODVE01003000
[ODVE] human metagenome; G_DNA_Supragingival plaque
158
231
+
Cys
GCA
[ENA]
¢þ
>WENV180982988
ODVF01002180
[ODVF] human metagenome; G_DNA_Supragingival plaque
154
227
+
Cys
GCA
[ENA]
¢þ
>WENV180998021
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
253118
253191
+
Cys
GCA
[ENA]
¢þ
>WENV181002024
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
258254
258327
+
Cys
GCA
[ENA]
¢þ
>WENV181007218
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
113323
113250
-
Cys
GCA
[ENA]
¢þ
>WENV181062983
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
12659
12732
+
Cys
GCA
[ENA]
¢þ
>WENV181067001
ODZI01004673
[ODZI] human metagenome; G_DNA_Supragingival plaque
4819
4746
-
Cys
GCA
[ENA]
¢þ
>WENV181075886
OEAP01000596
[OEAP] human metagenome; G_DNA_Supragingival plaque
14639
14712
+
Cys
GCA
[ENA]
¢þ
>WENV181078664
OEAS01000254
[OEAS] human metagenome; G_DNA_Supragingival plaque
2159
2232
+
Cys
GCA
[ENA]
¢þ
>WENV181084120
OEAV01068137
[OEAV] human metagenome; G_DNA_Supragingival plaque
518
445
-
Cys
GCA
[ENA]
¢þ
>WENV181106574
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
167538
167465
-
Cys
GCA
[ENA]
¢þ
>WENV181121154
OEFL01000789
[OEFL] human metagenome; G_DNA_Supragingival plaque
12189
12262
+
Cys
GCA
[ENA]
¢þ
>WENV181145922
OEHQ01000236
[OEHQ] human metagenome; G_DNA_Supragingival plaque
31932
31859
-
Cys
GCA
[ENA]
¢þ
>WENV181152080
OEIA01000070
[OEIA] human metagenome; G_DNA_Supragingival plaque
40763
40690
-
Cys
GCA
[ENA]
¢þ
>WENV183313392
OLVP01038755
[OLVP] human gut metagenome; faeces
98
171
+
Cys
GCA
[ENA]
¢þ
>WENV183696861
OUMM01000008
[OUMM] metagenome; soil
5788
5715
-
Cys
GCA
[ENA]
¢þ
>WENV170956602
MJUP01085946
[MJUP] soil metagenome; viral particles from soil sample MGM
709
782
+
Cys
GCA
[ENA]
¢þ
>WENV170981740
MWVT01192128
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
294
221
-
Cys
GCA
[ENA]
¢þ
>WENV170988508
MWVX01519386
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
269
196
-
Cys
GCA
[ENA]
¢þ
>SRA1004038
SRR002328.109629
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
260
187
-
Cys
GCA
[SRA]
>WENV080286
ABBV01000053
Oral TM7a microbial communities of Human
721
648
-
Cys
GCA
[ENA]
>WENV080326
ABBX01000006
Oral TM7c microbial communities of Human
1639
1712
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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