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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = GCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270387 (38 seq.)
>W131237286
AUNW01000075
Unclassified
candidate division TM7 bacterium JGI 0001002-L20 [AUNW]
1292
1368
+
Arg
GCG
[ENA]
¡û
>w027338
ABBX01000106
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
965
1043
+
Arg
GCG
[ENA]
¡û
>w027298
ABBV01003008
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
652
574
-
Arg
GCG
[ENA]
¡û
>WENV180726443
ODGU01000027
[ODGU] human metagenome; G_DNA_Supragingival plaque
15713
15789
+
Arg
GCG
[ENA]
¢þ
>WENV180749819
ODHS01000035
[ODHS] human metagenome; G_DNA_Supragingival plaque
18393
18469
+
Arg
GCG
[ENA]
¢þ
>WENV180764657
ODIB01000233
[ODIB] human metagenome; G_DNA_Supragingival plaque
469
393
-
Arg
GCG
[ENA]
¢þ
>WENV180787490
ODIS01007076
[ODIS] human metagenome; G_DNA_Supragingival plaque
3577
3501
-
Arg
GCG
[ENA]
¢þ
>WENV180795703
ODJB01000140
[ODJB] human metagenome; G_DNA_Supragingival plaque
37058
36982
-
Arg
GCG
[ENA]
¢þ
>WENV180800513
ODJD01000079
[ODJD] human metagenome; G_DNA_Supragingival plaque
30175
30099
-
Arg
GCG
[ENA]
¢þ
>WENV180803915
ODJG01000174
[ODJG] human metagenome; G_DNA_Supragingival plaque
15098
15174
+
Arg
GCG
[ENA]
¢þ
>WENV180808361
ODJK01000007
[ODJK] human metagenome; G_DNA_Subgingival plaque
55263
55339
+
Arg
GCG
[ENA]
¢þ
>WENV180812908
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
54343
54419
+
Arg
GCG
[ENA]
¢þ
>WENV180823903
ODJX01000005
[ODJX] human metagenome; G_DNA_Supragingival plaque
86680
86604
-
Arg
GCG
[ENA]
¢þ
>WENV180859786
ODLD01004572
[ODLD] human metagenome; G_DNA_Supragingival plaque
300
224
-
Arg
GCG
[ENA]
¢þ
>WENV180888013
ODMN01000014
[ODMN] human metagenome; G_DNA_Supragingival plaque
84713
84637
-
Arg
GCG
[ENA]
¢þ
>WENV180921489
ODTJ01000075
[ODTJ] human metagenome; G_DNA_Supragingival plaque
54978
55054
+
Arg
GCG
[ENA]
¢þ
>WENV180923587
ODTK01000030
[ODTK] human metagenome; G_DNA_Supragingival plaque
84730
84654
-
Arg
GCG
[ENA]
¢þ
>WENV180937718
ODTX01000038
[ODTX] human metagenome; G_DNA_Supragingival plaque
85390
85314
-
Arg
GCG
[ENA]
¢þ
>WENV180943224
ODUC01000040
[ODUC] human metagenome; G_DNA_Supragingival plaque
37370
37446
+
Arg
GCG
[ENA]
¢þ
>WENV180976421
ODUY01103792
[ODUY] human metagenome; G_DNA_Supragingival plaque
238
162
-
Arg
GCG
[ENA]
¢þ
>WENV180980893
ODVE01003171
[ODVE] human metagenome; G_DNA_Supragingival plaque
4072
3996
-
Arg
GCG
[ENA]
¢þ
>WENV180982487
ODVF01000038
[ODVF] human metagenome; G_DNA_Supragingival plaque
73307
73231
-
Arg
GCG
[ENA]
¢þ
>WENV180998067
ODVT01000006
[ODVT] human metagenome; G_DNA_Buccal mucosa
85336
85260
-
Arg
GCG
[ENA]
¢þ
>WENV181002010
ODVX01000002
[ODVX] human metagenome; G_DNA_Supragingival plaque
263340
263264
-
Arg
GCG
[ENA]
¢þ
>WENV181007263
ODWE01000009
[ODWE] human metagenome; G_DNA_Supragingival plaque
150064
150140
+
Arg
GCG
[ENA]
¢þ
>WENV181062975
ODYP01000018
[ODYP] human metagenome; G_DNA_Supragingival plaque
91232
91156
-
Arg
GCG
[ENA]
¢þ
>WENV181066405
ODZI01000017
[ODZI] human metagenome; G_DNA_Supragingival plaque
16777
16853
+
Arg
GCG
[ENA]
¢þ
>WENV181075799
OEAP01000313
[OEAP] human metagenome; G_DNA_Supragingival plaque
18076
18152
+
Arg
GCG
[ENA]
¢þ
>WENV181078331
OEAS01000012
[OEAS] human metagenome; G_DNA_Supragingival plaque
85417
85341
-
Arg
GCG
[ENA]
¢þ
>WENV181084357
OEAV01162025
[OEAV] human metagenome; G_DNA_Supragingival plaque
215
291
+
Arg
GCG
[ENA]
¢þ
>WENV181106590
OEEI01000004
[OEEI] human metagenome; G_DNA_Supragingival plaque
249080
249004
-
Arg
GCG
[ENA]
¢þ
>WENV181121207
OEFL01001373
[OEFL] human metagenome; G_DNA_Supragingival plaque
331
255
-
Arg
GCG
[ENA]
¢þ
>WENV181145723
OEHQ01000029
[OEHQ] human metagenome; G_DNA_Supragingival plaque
60894
60818
-
Arg
GCG
[ENA]
¢þ
>WENV181152028
OEIA01000029
[OEIA] human metagenome; G_DNA_Supragingival plaque
65230
65306
+
Arg
GCG
[ENA]
¢þ
>WENV183510780
OMHQ01012408
[OMHQ] human oral metagenome; human oral
1
77
+
Arg
GCG
[ENA]
¢þ
>WENV170476216
CEVI01084777
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
333
409
+
Arg
GCG
[ENA]
¢þ
>WENV080310
ABBV01003008
Oral TM7a microbial communities of Human
652
574
-
Arg
GCG
[ENA]
>WENV080349
ABBX01000106
Oral TM7c microbial communities of Human
965
1043
+
Arg
GCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK