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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = GCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12232 (97 seq.)
>w027325
ABBX01000022
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
33354
33448
+
Ser
GCT
[ENA]
¡û
>w027277
ABBV01000100
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
475
569
+
Ser
GCT
[ENA]
¡û
>WENV180007537
FLSA01066212
[FLSA] metagenome; saliva
989
897
-
Ser
GCT
[ENA]
¢þ
>WENV180030409
FTJM01004356
[FTJM] metagenome; soil
532
624
+
Ser
GCT
[ENA]
¢þ
>WENV180240969
OBDF01000249
[OBDF] human oral metagenome; human oral
1207
1299
+
Ser
GCT
[ENA]
¢þ
>WENV180698489
ODDH01007476
[ODDH] human metagenome; G_DNA_Buccal mucosa
33
125
+
Ser
GCT
[ENA]
¢þ
>WENV180721739
ODGL01009629
[ODGL] human metagenome; G_DNA_Subgingival plaque
165
257
+
Ser
GCT
[ENA]
¢þ
>WENV180727511
ODGU01006608
[ODGU] human metagenome; G_DNA_Supragingival plaque
5720
5628
-
Ser
GCT
[ENA]
¢þ
>WENV180733413
ODGZ01000021
[ODGZ] human metagenome; G_DNA_Supragingival plaque
22174
22082
-
Ser
GCT
[ENA]
¢þ
>WENV180733658
ODGZ01000424
[ODGZ] human metagenome; G_DNA_Supragingival plaque
7236
7144
-
Ser
GCT
[ENA]
¢þ
>WENV180734660
ODGZ01016417
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1132
1224
+
Ser
GCT
[ENA]
¢þ
>WENV180739246
ODHD01019672
[ODHD] human metagenome; G_DNA_Supragingival plaque
273
181
-
Ser
GCT
[ENA]
¢þ
>WENV180749818
ODHS01000035
[ODHS] human metagenome; G_DNA_Supragingival plaque
2649
2741
+
Ser
GCT
[ENA]
¢þ
>WENV180749999
ODHS01000229
[ODHS] human metagenome; G_DNA_Supragingival plaque
32830
32922
+
Ser
GCT
[ENA]
¢þ
>WENV180764656
ODIB01000233
[ODIB] human metagenome; G_DNA_Supragingival plaque
17324
17232
-
Ser
GCT
[ENA]
¢þ
>WENV180765809
ODID01001536
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
1900
1808
-
Ser
GCT
[ENA]
¢þ
>WENV180777776
ODIL01096838
[ODIL] human metagenome; G_DNA_Supragingival plaque
50
142
+
Ser
GCT
[ENA]
¢þ
>WENV180786881
ODIS01000412
[ODIS] human metagenome; G_DNA_Supragingival plaque
17650
17558
-
Ser
GCT
[ENA]
¢þ
>WENV180787108
ODIS01001362
[ODIS] human metagenome; G_DNA_Supragingival plaque
6130
6222
+
Ser
GCT
[ENA]
¢þ
>WENV180788268
ODIS01042703
[ODIS] human metagenome; G_DNA_Supragingival plaque
498
406
-
Ser
GCT
[ENA]
¢þ
>WENV180795702
ODJB01000140
[ODJB] human metagenome; G_DNA_Supragingival plaque
52788
52696
-
Ser
GCT
[ENA]
¢þ
>WENV180795987
ODJB01000877
[ODJB] human metagenome; G_DNA_Supragingival plaque
16372
16280
-
Ser
GCT
[ENA]
¢þ
>WENV180800512
ODJD01000079
[ODJD] human metagenome; G_DNA_Supragingival plaque
45926
45834
-
Ser
GCT
[ENA]
¢þ
>WENV180801083
ODJD01007288
[ODJD] human metagenome; G_DNA_Supragingival plaque
2092
2184
+
Ser
GCT
[ENA]
¢þ
>WENV180803780
ODJG01000051
[ODJG] human metagenome; G_DNA_Supragingival plaque
32833
32741
-
Ser
GCT
[ENA]
¢þ
>WENV180803977
ODJG01000234
[ODJG] human metagenome; G_DNA_Supragingival plaque
659
567
-
Ser
GCT
[ENA]
¢þ
>WENV180808360
ODJK01000007
[ODJK] human metagenome; G_DNA_Subgingival plaque
39520
39612
+
Ser
GCT
[ENA]
¢þ
>WENV180808588
ODJK01000259
[ODJK] human metagenome; G_DNA_Subgingival plaque
22873
22965
+
Ser
GCT
[ENA]
¢þ
>WENV180812907
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
38592
38684
+
Ser
GCT
[ENA]
¢þ
>WENV180813381
ODJO01000545
[ODJO] human metagenome; G_DNA_Supragingival plaque
11149
11241
+
Ser
GCT
[ENA]
¢þ
>WENV180822049
ODJT01000001
[ODJT] human metagenome; G_DNA_Supragingival plaque
426570
426478
-
Ser
GCT
[ENA]
¢þ
>WENV180823675
ODJW01101911
[ODJW] human metagenome; G_DNA_Supragingival plaque
136
228
+
Ser
GCT
[ENA]
¢þ
>WENV180823902
ODJX01000005
[ODJX] human metagenome; G_DNA_Supragingival plaque
102423
102331
-
Ser
GCT
[ENA]
¢þ
>WENV180835694
ODKE01008620
[ODKE] human metagenome; G_DNA_Supragingival plaque
2195
2103
-
Ser
GCT
[ENA]
¢þ
>WENV180842788
ODKN01000011
[ODKN] human metagenome; G_DNA_Supragingival plaque
45782
45874
+
Ser
GCT
[ENA]
¢þ
>WENV180846418
ODKT01010697
[ODKT] human metagenome; G_DNA_Supragingival plaque
518
610
+
Ser
GCT
[ENA]
¢þ
>WENV180846849
ODKT01025917
[ODKT] human metagenome; G_DNA_Supragingival plaque
652
744
+
Ser
GCT
[ENA]
¢þ
>WENV180847897
ODKT01233651
[ODKT] human metagenome; G_DNA_Supragingival plaque
192
284
+
Ser
GCT
[ENA]
¢þ
>WENV180859211
ODLD01000081
[ODLD] human metagenome; G_DNA_Supragingival plaque
49623
49715
+
Ser
GCT
[ENA]
¢þ
>WENV180888012
ODMN01000014
[ODMN] human metagenome; G_DNA_Supragingival plaque
100457
100365
-
Ser
GCT
[ENA]
¢þ
>WENV180888474
ODMN01001124
[ODMN] human metagenome; G_DNA_Supragingival plaque
659
751
+
Ser
GCT
[ENA]
¢þ
>WENV180921488
ODTJ01000075
[ODTJ] human metagenome; G_DNA_Supragingival plaque
39230
39322
+
Ser
GCT
[ENA]
¢þ
>WENV180921989
ODTJ01000943
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3702
3610
-
Ser
GCT
[ENA]
¢þ
>WENV180923471
ODTK01000002
[ODTK] human metagenome; G_DNA_Supragingival plaque
297586
297678
+
Ser
GCT
[ENA]
¢þ
>WENV180923676
ODTK01000085
[ODTK] human metagenome; G_DNA_Supragingival plaque
65144
65236
+
Ser
GCT
[ENA]
¢þ
>WENV180928414
ODTM01046733
[ODTM] human metagenome; G_DNA_Supragingival plaque
4
96
+
Ser
GCT
[ENA]
¢þ
>WENV180937717
ODTX01000038
[ODTX] human metagenome; G_DNA_Supragingival plaque
101141
101049
-
Ser
GCT
[ENA]
¢þ
>WENV180937735
ODTX01000049
[ODTX] human metagenome; G_DNA_Supragingival plaque
76094
76002
-
Ser
GCT
[ENA]
¢þ
>WENV180943223
ODUC01000040
[ODUC] human metagenome; G_DNA_Supragingival plaque
21627
21719
+
Ser
GCT
[ENA]
¢þ
>WENV180943431
ODUC01000493
[ODUC] human metagenome; G_DNA_Supragingival plaque
16879
16787
-
Ser
GCT
[ENA]
¢þ
>WENV180951750
ODUH01050476
[ODUH] human metagenome; G_DNA_Subgingival plaque
571
479
-
Ser
GCT
[ENA]
¢þ
>WENV180958512
ODUL01006927
[ODUL] human metagenome; G_DNA_Supragingival plaque
1482
1574
+
Ser
GCT
[ENA]
¢þ
>WENV180975535
ODUY01009350
[ODUY] human metagenome; G_DNA_Supragingival plaque
1596
1688
+
Ser
GCT
[ENA]
¢þ
>WENV180980626
ODVE01000829
[ODVE] human metagenome; G_DNA_Supragingival plaque
5639
5731
+
Ser
GCT
[ENA]
¢þ
>WENV180982486
ODVF01000038
[ODVF] human metagenome; G_DNA_Supragingival plaque
89052
88960
-
Ser
GCT
[ENA]
¢þ
>WENV180982804
ODVF01000812
[ODVF] human metagenome; G_DNA_Supragingival plaque
1912
2004
+
Ser
GCT
[ENA]
¢þ
>WENV180998066
ODVT01000006
[ODVT] human metagenome; G_DNA_Buccal mucosa
101080
100988
-
Ser
GCT
[ENA]
¢þ
>WENV180998211
ODVT01000078
[ODVT] human metagenome; G_DNA_Buccal mucosa
39223
39131
-
Ser
GCT
[ENA]
¢þ
>WENV181002009
ODVX01000002
[ODVX] human metagenome; G_DNA_Supragingival plaque
279089
278997
-
Ser
GCT
[ENA]
¢þ
>WENV181007262
ODWE01000009
[ODWE] human metagenome; G_DNA_Supragingival plaque
128687
128779
+
Ser
GCT
[ENA]
¢þ
>WENV181018711
ODWU01000039
[ODWU] human metagenome; G_DNA_Supragingival plaque
22922
22830
-
Ser
GCT
[ENA]
¢þ
>WENV181029756
ODXF01003157
[ODXF] human metagenome; G_DNA_Supragingival plaque
633
725
+
Ser
GCT
[ENA]
¢þ
>WENV181043121
ODXU01046317
[ODXU] human metagenome; G_DNA_Buccal mucosa
240
332
+
Ser
GCT
[ENA]
¢þ
>WENV181049240
ODYD01000001
[ODYD] human metagenome; G_DNA_Supragingival plaque
38950
38858
-
Ser
GCT
[ENA]
¢þ
>WENV181062974
ODYP01000018
[ODYP] human metagenome; G_DNA_Supragingival plaque
106982
106890
-
Ser
GCT
[ENA]
¢þ
>WENV181063606
ODYP01001822
[ODYP] human metagenome; G_DNA_Supragingival plaque
4412
4320
-
Ser
GCT
[ENA]
¢þ
>WENV181066404
ODZI01000017
[ODZI] human metagenome; G_DNA_Supragingival plaque
1034
1126
+
Ser
GCT
[ENA]
¢þ
>WENV181068145
ODZI01137084
[ODZI] human metagenome; G_DNA_Supragingival plaque
141
49
-
Ser
GCT
[ENA]
¢þ
>WENV181075674
OEAP01000135
[OEAP] human metagenome; G_DNA_Supragingival plaque
32591
32683
+
Ser
GCT
[ENA]
¢þ
>WENV181075798
OEAP01000313
[OEAP] human metagenome; G_DNA_Supragingival plaque
2347
2439
+
Ser
GCT
[ENA]
¢þ
>WENV181078329
OEAS01000012
[OEAS] human metagenome; G_DNA_Supragingival plaque
102496
102404
-
Ser
GCT
[ENA]
¢þ
>WENV181079428
OEAS01006416
[OEAS] human metagenome; G_DNA_Supragingival plaque
7
99
+
Ser
GCT
[ENA]
¢þ
>WENV181091367
OEBC01028173
[OEBC] human metagenome; G_DNA_Supragingival plaque
939
847
-
Ser
GCT
[ENA]
¢þ
>WENV181106779
OEEI01000164
[OEEI] human metagenome; G_DNA_Supragingival plaque
93
1
-
Ser
GCT
[ENA]
¢þ
>WENV181125353
OEFT01065400
[OEFT] human metagenome; G_DNA_Tongue dorsum
172
264
+
Ser
GCT
[ENA]
¢þ
>WENV181130903
OEFY01142238
[OEFY] human metagenome; G_DNA_Throat
103
11
-
Ser
GCT
[ENA]
¢þ
>WENV181137785
OEGJ01025377
[OEGJ] human metagenome; G_DNA_Supragingival plaque
630
538
-
Ser
GCT
[ENA]
¢þ
>WENV181145722
OEHQ01000029
[OEHQ] human metagenome; G_DNA_Supragingival plaque
76644
76552
-
Ser
GCT
[ENA]
¢þ
>WENV181146011
OEHQ01000517
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4799
4891
+
Ser
GCT
[ENA]
¢þ
>WENV181152027
OEIA01000029
[OEIA] human metagenome; G_DNA_Supragingival plaque
49500
49592
+
Ser
GCT
[ENA]
¢þ
>WENV181152030
OEIA01000030
[OEIA] human metagenome; G_DNA_Supragingival plaque
1227
1319
+
Ser
GCT
[ENA]
¢þ
>WENV181920114
OGYI01018568
[OGYI] human gut metagenome; faeces
366
274
-
Ser
GCT
[ENA]
¢þ
>WENV183507923
OMGZ01000688
[OMGZ] human oral metagenome; human oral
1031
1123
+
Ser
GCT
[ENA]
¢þ
>WENV183508044
OMHA01003891
[OMHA] human oral metagenome; human oral
351
259
-
Ser
GCT
[ENA]
¢þ
>WENV183508746
OMHF01002010
[OMHF] human oral metagenome; human oral
215
307
+
Ser
GCT
[ENA]
¢þ
>WENV183509794
OMHJ01014682
[OMHJ] human oral metagenome; human oral
261
353
+
Ser
GCT
[ENA]
¢þ
>WENV183510030
OMHL01003035
[OMHL] human oral metagenome; human oral
545
637
+
Ser
GCT
[ENA]
¢þ
>WENV183510294
OMHN01002020
[OMHN] human oral metagenome; human oral
932
1024
+
Ser
GCT
[ENA]
¢þ
>WENV183511115
OMHV01008508
[OMHV] human oral metagenome; human oral
372
280
-
Ser
GCT
[ENA]
¢þ
>WENV183710984
PDWI01057994
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3029
3121
+
Ser
GCT
[ENA]
¢þ
>WENV183712612
PDWI01107054
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
772
680
-
Ser
GCT
[ENA]
¢þ
>WENV183712755
PDWI01112818
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3195
3287
+
Ser
GCT
[ENA]
¢þ
>WENV170388715
CETZ01117767
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
157
249
+
Ser
GCT
[ENA]
¢þ
>C191173635
CP040003
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 AC001 [CP040003]
25689
25781
+
Ser
GCT
-
¡û
>W1911622423
PQNZ01000004
Unclassified
Candidatus Nanosynsacchari sp. TM7_ANC_38.39_G1_1 bacterium TM7_ANC_38.39_G1_1 TM7_ANC_G1_1 [PQNZ]
9156
9248
+
Ser
GCT
[ENA]
¡û
>WENV080288
ABBV01000100
Oral TM7a microbial communities of Human
475
569
+
Ser
GCT
[ENA]
>WENV080336
ABBX01000022
Oral TM7c microbial communities of Human
33354
33448
+
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK