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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45665 (6 seq.)
>w027323
ABBX01000021
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
1940
2031
+
Ser
GGA
[ENA]
¡û
>w027284
ABBV01000872
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
2875
2784
-
Ser
GGA
[ENA]
¡û
>WENV181002007
ODVX01000002
[ODVX] human metagenome; G_DNA_Supragingival plaque
360398
360487
+
Ser
GGA
[ENA]
¢þ
>WENV181145825
OEHQ01000113
[OEHQ] human metagenome; G_DNA_Supragingival plaque
16866
16955
+
Ser
GGA
[ENA]
¢þ
>WENV080295
ABBV01000872
Oral TM7a microbial communities of Human
2875
2784
-
Ser
GGA
[ENA]
>WENV080334
ABBX01000021
Oral TM7c microbial communities of Human
1940
2031
+
Ser
GGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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