This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86854 (7 seq.)
>w027315
ABBX01000006
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
2355
2444
+
Leu
TAA
[ENA]
¡û
>WENV180800583
ODJD01000206
[ODJD] human metagenome; G_DNA_Supragingival plaque
14075
13988
-
Leu
TAA
[ENA]
¢þ
>WENV180921775
ODTJ01000385
[ODTJ] human metagenome; G_DNA_Supragingival plaque
35483
35570
+
Leu
TAA
[ENA]
¢þ
>WENV180924193
ODTK01001756
[ODTK] human metagenome; G_DNA_Supragingival plaque
3033
3120
+
Leu
TAA
[ENA]
¢þ
>WENV181002025
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
258971
259058
+
Leu
TAA
[ENA]
¢þ
>WENV181152081
OEIA01000070
[OEIA] human metagenome; G_DNA_Supragingival plaque
40046
39959
-
Leu
TAA
[ENA]
¢þ
>WENV080327
ABBX01000006
Oral TM7c microbial communities of Human
2355
2444
+
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK