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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451328 (34 seq.)
>w027345
ABBX01000127
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
22280
22208
-
Arg
TCT
[ENA]
¡û
>WENV180726475
ODGU01000036
[ODGU] human metagenome; G_DNA_Supragingival plaque
48714
48639
-
Arg
TCT
[ENA]
¢þ
>WENV180739408
ODHD01072962
[ODHD] human metagenome; G_DNA_Supragingival plaque
171
246
+
Arg
TCT
[ENA]
¢þ
>WENV180749830
ODHS01000036
[ODHS] human metagenome; G_DNA_Supragingival plaque
54044
54119
+
Arg
TCT
[ENA]
¢þ
>WENV180764828
ODIB01001721
[ODIB] human metagenome; G_DNA_Supragingival plaque
1346
1271
-
Arg
TCT
[ENA]
¢þ
>WENV180786949
ODIS01000584
[ODIS] human metagenome; G_DNA_Supragingival plaque
12654
12579
-
Arg
TCT
[ENA]
¢þ
>WENV180795173
ODIZ01045151
[ODIZ] human metagenome; G_DNA_Tongue dorsum
423
498
+
Arg
TCT
[ENA]
¢þ
>WENV180795624
ODJB01000080
[ODJB] human metagenome; G_DNA_Supragingival plaque
44183
44108
-
Arg
TCT
[ENA]
¢þ
>WENV180800455
ODJD01000026
[ODJD] human metagenome; G_DNA_Supragingival plaque
49851
49926
+
Arg
TCT
[ENA]
¢þ
>WENV180803795
ODJG01000063
[ODJG] human metagenome; G_DNA_Supragingival plaque
18607
18682
+
Arg
TCT
[ENA]
¢þ
>WENV180808409
ODJK01000021
[ODJK] human metagenome; G_DNA_Subgingival plaque
32263
32338
+
Arg
TCT
[ENA]
¢þ
>WENV180813029
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
170420
170495
+
Arg
TCT
[ENA]
¢þ
>WENV180823935
ODJX01000013
[ODJX] human metagenome; G_DNA_Supragingival plaque
56330
56405
+
Arg
TCT
[ENA]
¢þ
>WENV180846875
ODKT01027052
[ODKT] human metagenome; G_DNA_Supragingival plaque
1731
1806
+
Arg
TCT
[ENA]
¢þ
>WENV180859330
ODLD01000343
[ODLD] human metagenome; G_DNA_Supragingival plaque
21208
21133
-
Arg
TCT
[ENA]
¢þ
>WENV180888073
ODMN01000037
[ODMN] human metagenome; G_DNA_Supragingival plaque
47883
47808
-
Arg
TCT
[ENA]
¢þ
>WENV180921513
ODTJ01000091
[ODTJ] human metagenome; G_DNA_Supragingival plaque
58183
58108
-
Arg
TCT
[ENA]
¢þ
>WENV180923812
ODTK01000202
[ODTK] human metagenome; G_DNA_Supragingival plaque
33660
33585
-
Arg
TCT
[ENA]
¢þ
>WENV180937673
ODTX01000024
[ODTX] human metagenome; G_DNA_Supragingival plaque
60581
60656
+
Arg
TCT
[ENA]
¢þ
>WENV180943252
ODUC01000065
[ODUC] human metagenome; G_DNA_Supragingival plaque
13448
13523
+
Arg
TCT
[ENA]
¢þ
>WENV180980842
ODVE01002556
[ODVE] human metagenome; G_DNA_Supragingival plaque
4832
4757
-
Arg
TCT
[ENA]
¢þ
>WENV180982523
ODVF01000055
[ODVF] human metagenome; G_DNA_Supragingival plaque
32142
32217
+
Arg
TCT
[ENA]
¢þ
>WENV180998029
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
320670
320745
+
Arg
TCT
[ENA]
¢þ
>WENV181002032
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
323192
323267
+
Arg
TCT
[ENA]
¢þ
>WENV181007226
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
48714
48639
-
Arg
TCT
[ENA]
¢þ
>WENV181062991
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
81160
81235
+
Arg
TCT
[ENA]
¢þ
>WENV181066463
ODZI01000052
[ODZI] human metagenome; G_DNA_Supragingival plaque
55532
55607
+
Arg
TCT
[ENA]
¢þ
>WENV181075928
OEAP01000777
[OEAP] human metagenome; G_DNA_Supragingival plaque
12676
12601
-
Arg
TCT
[ENA]
¢þ
>WENV181078436
OEAS01000066
[OEAS] human metagenome; G_DNA_Supragingival plaque
48708
48633
-
Arg
TCT
[ENA]
¢þ
>WENV181106582
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
97463
97388
-
Arg
TCT
[ENA]
¢þ
>WENV181121071
OEFL01000341
[OEFL] human metagenome; G_DNA_Supragingival plaque
12381
12456
+
Arg
TCT
[ENA]
¢þ
>WENV181145812
OEHQ01000089
[OEHQ] human metagenome; G_DNA_Supragingival plaque
56327
56252
-
Arg
TCT
[ENA]
¢þ
>WENV181152095
OEIA01000086
[OEIA] human metagenome; G_DNA_Supragingival plaque
30611
30536
-
Arg
TCT
[ENA]
¢þ
>WENV080352
ABBX01000127
Oral TM7c microbial communities of Human
22280
22205
-
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK