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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45666 (30 seq.)
>w027324
ABBX01000022
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
32314
32405
+
Ser
TGA
[ENA]
¡û
>WENV180726693
ODGU01000273
[ODGU] human metagenome; G_DNA_Supragingival plaque
1094
1005
-
Ser
TGA
[ENA]
¢þ
>WENV180749817
ODHS01000035
[ODHS] human metagenome; G_DNA_Supragingival plaque
1610
1699
+
Ser
TGA
[ENA]
¢þ
>WENV180764655
ODIB01000233
[ODIB] human metagenome; G_DNA_Supragingival plaque
18364
18275
-
Ser
TGA
[ENA]
¢þ
>WENV180787107
ODIS01001362
[ODIS] human metagenome; G_DNA_Supragingival plaque
5090
5179
+
Ser
TGA
[ENA]
¢þ
>WENV180795759
ODJB01000242
[ODJB] human metagenome; G_DNA_Supragingival plaque
38141
38230
+
Ser
TGA
[ENA]
¢þ
>WENV180800511
ODJD01000079
[ODJD] human metagenome; G_DNA_Supragingival plaque
46966
46877
-
Ser
TGA
[ENA]
¢þ
>WENV180803976
ODJG01000234
[ODJG] human metagenome; G_DNA_Supragingival plaque
1699
1610
-
Ser
TGA
[ENA]
¢þ
>WENV180808359
ODJK01000007
[ODJK] human metagenome; G_DNA_Subgingival plaque
38479
38568
+
Ser
TGA
[ENA]
¢þ
>WENV180812906
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
37552
37641
+
Ser
TGA
[ENA]
¢þ
>WENV180823901
ODJX01000005
[ODJX] human metagenome; G_DNA_Supragingival plaque
103464
103375
-
Ser
TGA
[ENA]
¢þ
>WENV180859210
ODLD01000081
[ODLD] human metagenome; G_DNA_Supragingival plaque
48584
48673
+
Ser
TGA
[ENA]
¢þ
>WENV180888011
ODMN01000014
[ODMN] human metagenome; G_DNA_Supragingival plaque
101496
101407
-
Ser
TGA
[ENA]
¢þ
>WENV180921487
ODTJ01000075
[ODTJ] human metagenome; G_DNA_Supragingival plaque
38187
38276
+
Ser
TGA
[ENA]
¢þ
>WENV180923585
ODTK01000030
[ODTK] human metagenome; G_DNA_Supragingival plaque
101520
101431
-
Ser
TGA
[ENA]
¢þ
>WENV180937716
ODTX01000038
[ODTX] human metagenome; G_DNA_Supragingival plaque
102181
102092
-
Ser
TGA
[ENA]
¢þ
>WENV180943222
ODUC01000040
[ODUC] human metagenome; G_DNA_Supragingival plaque
20587
20676
+
Ser
TGA
[ENA]
¢þ
>WENV180981029
ODVE01005473
[ODVE] human metagenome; G_DNA_Supragingival plaque
3026
3115
+
Ser
TGA
[ENA]
¢þ
>WENV180998065
ODVT01000006
[ODVT] human metagenome; G_DNA_Buccal mucosa
102119
102030
-
Ser
TGA
[ENA]
¢þ
>WENV181002008
ODVX01000002
[ODVX] human metagenome; G_DNA_Supragingival plaque
280129
280040
-
Ser
TGA
[ENA]
¢þ
>WENV181007261
ODWE01000009
[ODWE] human metagenome; G_DNA_Supragingival plaque
127648
127737
+
Ser
TGA
[ENA]
¢þ
>WENV181043132
ODXU01049659
[ODXU] human metagenome; G_DNA_Buccal mucosa
241
152
-
Ser
TGA
[ENA]
¢þ
>WENV181062973
ODYP01000018
[ODYP] human metagenome; G_DNA_Supragingival plaque
108022
107933
-
Ser
TGA
[ENA]
¢þ
>WENV181075797
OEAP01000313
[OEAP] human metagenome; G_DNA_Supragingival plaque
1307
1396
+
Ser
TGA
[ENA]
¢þ
>WENV181078328
OEAS01000012
[OEAS] human metagenome; G_DNA_Supragingival plaque
103535
103446
-
Ser
TGA
[ENA]
¢þ
>WENV181106778
OEEI01000164
[OEEI] human metagenome; G_DNA_Supragingival plaque
1133
1044
-
Ser
TGA
[ENA]
¢þ
>WENV181121515
OEFL01006012
[OEFL] human metagenome; G_DNA_Supragingival plaque
1691
1602
-
Ser
TGA
[ENA]
¢þ
>WENV181145721
OEHQ01000029
[OEHQ] human metagenome; G_DNA_Supragingival plaque
77684
77595
-
Ser
TGA
[ENA]
¢þ
>WENV181152026
OEIA01000029
[OEIA] human metagenome; G_DNA_Supragingival plaque
48457
48546
+
Ser
TGA
[ENA]
¢þ
>WENV080335
ABBX01000022
Oral TM7c microbial communities of Human
32314
32405
+
Ser
TGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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