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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240595 (28 seq.)
>w027346
ABBX01000127
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
9675
9601
-
Pro
TGG
[ENA]
¡û
>WENV180726476
ODGU01000036
[ODGU] human metagenome; G_DNA_Supragingival plaque
36109
36032
-
Pro
TGG
[ENA]
¢þ
>WENV180739329
ODHD01036924
[ODHD] human metagenome; G_DNA_Supragingival plaque
312
389
+
Pro
TGG
[ENA]
¢þ
>WENV180749831
ODHS01000036
[ODHS] human metagenome; G_DNA_Supragingival plaque
66649
66726
+
Pro
TGG
[ENA]
¢þ
>WENV180764815
ODIB01001468
[ODIB] human metagenome; G_DNA_Supragingival plaque
1388
1311
-
Pro
TGG
[ENA]
¢þ
>WENV180795625
ODJB01000080
[ODJB] human metagenome; G_DNA_Supragingival plaque
31579
31502
-
Pro
TGG
[ENA]
¢þ
>WENV180800456
ODJD01000026
[ODJD] human metagenome; G_DNA_Supragingival plaque
62455
62532
+
Pro
TGG
[ENA]
¢þ
>WENV180803796
ODJG01000063
[ODJG] human metagenome; G_DNA_Supragingival plaque
31207
31284
+
Pro
TGG
[ENA]
¢þ
>WENV180808410
ODJK01000021
[ODJK] human metagenome; G_DNA_Subgingival plaque
44868
44945
+
Pro
TGG
[ENA]
¢þ
>WENV180813030
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
183020
183097
+
Pro
TGG
[ENA]
¢þ
>WENV180823936
ODJX01000013
[ODJX] human metagenome; G_DNA_Supragingival plaque
68935
69012
+
Pro
TGG
[ENA]
¢þ
>WENV180859331
ODLD01000343
[ODLD] human metagenome; G_DNA_Supragingival plaque
8603
8526
-
Pro
TGG
[ENA]
¢þ
>WENV180888074
ODMN01000037
[ODMN] human metagenome; G_DNA_Supragingival plaque
35278
35201
-
Pro
TGG
[ENA]
¢þ
>WENV180921514
ODTJ01000091
[ODTJ] human metagenome; G_DNA_Supragingival plaque
45579
45502
-
Pro
TGG
[ENA]
¢þ
>WENV180923813
ODTK01000202
[ODTK] human metagenome; G_DNA_Supragingival plaque
21055
20978
-
Pro
TGG
[ENA]
¢þ
>WENV180937674
ODTX01000024
[ODTX] human metagenome; G_DNA_Supragingival plaque
73181
73258
+
Pro
TGG
[ENA]
¢þ
>WENV180943253
ODUC01000065
[ODUC] human metagenome; G_DNA_Supragingival plaque
26053
26130
+
Pro
TGG
[ENA]
¢þ
>WENV180982524
ODVF01000055
[ODVF] human metagenome; G_DNA_Supragingival plaque
44747
44824
+
Pro
TGG
[ENA]
¢þ
>WENV180998030
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
333275
333352
+
Pro
TGG
[ENA]
¢þ
>WENV181002033
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
335792
335869
+
Pro
TGG
[ENA]
¢þ
>WENV181007227
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
36109
36032
-
Pro
TGG
[ENA]
¢þ
>WENV181062992
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
93765
93842
+
Pro
TGG
[ENA]
¢þ
>WENV181078437
OEAS01000066
[OEAS] human metagenome; G_DNA_Supragingival plaque
36103
36026
-
Pro
TGG
[ENA]
¢þ
>WENV181106583
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
84863
84786
-
Pro
TGG
[ENA]
¢þ
>WENV181121157
OEFL01000794
[OEFL] human metagenome; G_DNA_Supragingival plaque
4616
4693
+
Pro
TGG
[ENA]
¢þ
>WENV181145813
OEHQ01000089
[OEHQ] human metagenome; G_DNA_Supragingival plaque
43723
43646
-
Pro
TGG
[ENA]
¢þ
>WENV181152096
OEIA01000086
[OEIA] human metagenome; G_DNA_Supragingival plaque
18007
17930
-
Pro
TGG
[ENA]
¢þ
>WENV080351
ABBX01000127
Oral TM7c microbial communities of Human
9675
9598
-
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK