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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7c microbial communities of Human
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270382 (36 seq.)
>w027330
ABBX01000056
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
3045
2972
-
Thr
TGT
[ENA]
¡û
>w027312
ABBW01000069
Unclassified
candidate division TM7 single-cell isolate TM7b TM7 isolate TM7b [ABBW]
2072
2148
+
Thr
TGT
[ENA]
¡û
>WENV180241204
OBDF01074944
[OBDF] human oral metagenome; human oral
87
11
-
Thr
TGT
[ENA]
¢þ
>WENV180726413
ODGU01000013
[ODGU] human metagenome; G_DNA_Supragingival plaque
79470
79394
-
Thr
TGT
[ENA]
¢þ
>WENV180750429
ODHS01002217
[ODHS] human metagenome; G_DNA_Supragingival plaque
143
67
-
Thr
TGT
[ENA]
¢þ
>WENV180764773
ODIB01001024
[ODIB] human metagenome; G_DNA_Supragingival plaque
2113
2189
+
Thr
TGT
[ENA]
¢þ
>WENV180787245
ODIS01002571
[ODIS] human metagenome; G_DNA_Supragingival plaque
4151
4075
-
Thr
TGT
[ENA]
¢þ
>WENV180795940
ODJB01000650
[ODJB] human metagenome; G_DNA_Supragingival plaque
171
95
-
Thr
TGT
[ENA]
¢þ
>WENV180800534
ODJD01000103
[ODJD] human metagenome; G_DNA_Supragingival plaque
22499
22423
-
Thr
TGT
[ENA]
¢þ
>WENV180803639
ODJG01000009
[ODJG] human metagenome; G_DNA_Supragingival plaque
54718
54794
+
Thr
TGT
[ENA]
¢þ
>WENV180808400
ODJK01000016
[ODJK] human metagenome; G_DNA_Subgingival plaque
71756
71680
-
Thr
TGT
[ENA]
¢þ
>WENV180812920
ODJO01000003
[ODJO] human metagenome; G_DNA_Supragingival plaque
417178
417102
-
Thr
TGT
[ENA]
¢þ
>WENV180823895
ODJX01000003
[ODJX] human metagenome; G_DNA_Supragingival plaque
127358
127282
-
Thr
TGT
[ENA]
¢þ
>WENV180859386
ODLD01000530
[ODLD] human metagenome; G_DNA_Supragingival plaque
22510
22434
-
Thr
TGT
[ENA]
¢þ
>WENV180887984
ODMN01000007
[ODMN] human metagenome; G_DNA_Supragingival plaque
102069
101993
-
Thr
TGT
[ENA]
¢þ
>WENV180921456
ODTJ01000065
[ODTJ] human metagenome; G_DNA_Supragingival plaque
21442
21518
+
Thr
TGT
[ENA]
¢þ
>WENV180924582
ODTK01008172
[ODTK] human metagenome; G_DNA_Supragingival plaque
136
60
-
Thr
TGT
[ENA]
¢þ
>WENV180937681
ODTX01000026
[ODTX] human metagenome; G_DNA_Supragingival plaque
54684
54760
+
Thr
TGT
[ENA]
¢þ
>WENV180944373
ODUC01015486
[ODUC] human metagenome; G_DNA_Supragingival plaque
433
509
+
Thr
TGT
[ENA]
¢þ
>WENV180980825
ODVE01002336
[ODVE] human metagenome; G_DNA_Supragingival plaque
6008
5932
-
Thr
TGT
[ENA]
¢þ
>WENV180982571
ODVF01000117
[ODVF] human metagenome; G_DNA_Supragingival plaque
54352
54428
+
Thr
TGT
[ENA]
¢þ
>WENV180987825
ODVK01168902
[ODVK] human metagenome; G_DNA_Supragingival plaque
119
43
-
Thr
TGT
[ENA]
¢þ
>WENV180998036
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
102069
101993
-
Thr
TGT
[ENA]
¢þ
>WENV181002039
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
100102
100026
-
Thr
TGT
[ENA]
¢þ
>WENV181007213
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
269714
269790
+
Thr
TGT
[ENA]
¢þ
>WENV181063017
ODYP01000026
[ODYP] human metagenome; G_DNA_Supragingival plaque
125664
125588
-
Thr
TGT
[ENA]
¢þ
>WENV181066381
ODZI01000006
[ODZI] human metagenome; G_DNA_Supragingival plaque
54717
54793
+
Thr
TGT
[ENA]
¢þ
>WENV181077480
OEAP01062669
[OEAP] human metagenome; G_DNA_Supragingival plaque
586
662
+
Thr
TGT
[ENA]
¢þ
>WENV181078492
OEAS01000097
[OEAS] human metagenome; G_DNA_Supragingival plaque
45121
45045
-
Thr
TGT
[ENA]
¢þ
>WENV181092033
OEBC01195773
[OEBC] human metagenome; G_DNA_Supragingival plaque
102
26
-
Thr
TGT
[ENA]
¢þ
>WENV181106652
OEEI01000016
[OEEI] human metagenome; G_DNA_Supragingival plaque
21439
21515
+
Thr
TGT
[ENA]
¢þ
>WENV181145686
OEHQ01000009
[OEHQ] human metagenome; G_DNA_Supragingival plaque
125236
125312
+
Thr
TGT
[ENA]
¢þ
>WENV181151993
OEIA01000009
[OEIA] human metagenome; G_DNA_Supragingival plaque
138756
138832
+
Thr
TGT
[ENA]
¢þ
>WENV183508835
OMHF01008374
[OMHF] human oral metagenome; human oral
469
393
-
Thr
TGT
[ENA]
¢þ
>WENV080323
ABBW01000069
Oral TM7b microbial communities of Human
2072
2148
+
Thr
TGT
[ENA]
>WENV080341
ABBX01000056
Oral TM7c microbial communities of Human
3045
2969
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK