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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Phycodnaviridae
Anticodon = AAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229545 (4 seq.)
>WENV170268054
CERG01042758
[CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
178
96
-
Leu
AAG
[ENA]
¢þ
>WENV170284700
CERV01076447
[CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1068
1150
+
Leu
AAG
[ENA]
¢þ
>WENV170515925
CEWB01064444
[CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
44
126
+
Leu
AAG
[ENA]
¢þ
>VRL181000035
HM004432
Phycodnaviridae
Bathycoccus sp. RCC1105 virus BpV1 (HM004432)
131783
131864
+
Leu
AAG
[ENA]
¡û
Identical group No.230477 (3 seq.)
>WENV170618280
FUWD012960674
[FUWD] metagenome; unknown
220
138
-
Leu
AAG
[ENA]
¢þ
>VRL181000032
HM004430
Phycodnaviridae
Bathycoccus sp. RCC1105 virus BpV2 (HM004430)
129949
130030
+
Leu
AAG
[ENA]
¡û
>WENV046828
AACY022625135
Marine microbial communities from Global Ocean Sampling (GOS)
661
579
-
Leu
AAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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