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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Phycodnaviridae
Anticodon = CAA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104860 (1 seq.)
>VRL0100091
DQ491002
Phycodnaviridae
Paramecium bursaria Chlorella virus NY2A
194921
195006
+
Leu
CAA
[ENA]
¡û
Identical group No.126441 (1 seq.)
>VRL181000073
JN225873
Phycodnaviridae
Ostreococcus tauri virus RT-2011 (JN225873)
119774
119689
-
Leu
CAA
[ENA]
¡û
Identical group No.130179 (2 seq.)
>VRL0100098
DQ491003
Phycodnaviridae
Paramecium bursaria Chlorella virus AR158
172430
172514
+
Leu
CAA
[ENA]
¡û
>VRL182000014
JX997183
Phycodnaviridae
Paramecium bursaria Chlorella virus NYs1 (JX997183)
180656
180740
+
Leu
CAA
[ENA]
¡û
Identical group No.147997 (2 seq.)
>VRL182000003
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
114640
114724
+
Leu
CAA
[ENA]
¡û
>VRL182000006
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
129885
129969
+
Leu
CAA
[ENA]
¡û
Identical group No.164173 (1 seq.)
>VRL183000079
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
90791
90874
+
Leu
CAA
[ENA]
¡û
Identical group No.166471 (1 seq.)
>VRL0300015
AJ890364
Phycodnaviridae
Emiliania huxleyi virus 86
39441
39339
-
Leu
CAA
[ENA]
¡û
Identical group No.198335 (1 seq.)
>VRL181000524
KT820662
Phycodnaviridae
Chrysochromulina ericina virus (KT820662)
74562
74479
-
Leu
CAA
[ENA]
¡û
Identical group No.218388 (13 seq.)
>VRL0100022
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
1
81
+
Leu
CAA
[ENA]
¡û
>VRL0100038
AB011505
Phycodnaviridae
Paramecium bursaria Chlorella virus T1
67
150
+
Leu
CAA
[ENA]
¡û
>VRL181000049
JF411744
Phycodnaviridae
Paramecium bursaria Chlorella virus 1 (JF411744)
164946
165026
+
Leu
CAA
[ENA]
¡û
>VRL181000100
JX997153
Phycodnaviridae
Paramecium bursaria Chlorella virus AN69C (JX997153)
165245
165325
+
Leu
CAA
[ENA]
¡û
>VRL181000172
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
151880
151960
+
Leu
CAA
[ENA]
¡û
>VRL181000200
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
153724
153804
+
Leu
CAA
[ENA]
¡û
>VRL181000235
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
159156
159236
+
Leu
CAA
[ENA]
¡û
>VRL181000246
JX997170
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-5-2s1 (JX997170)
175844
175927
+
Leu
CAA
[ENA]
¡û
>VRL181000251
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
128750
128833
+
Leu
CAA
[ENA]
¡û
>VRL181000261
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
134220
134300
+
Leu
CAA
[ENA]
¡û
>VRL181000270
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
157948
158028
+
Leu
CAA
[ENA]
¡û
>VRL181000315
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
167202
167282
+
Leu
CAA
[ENA]
¡û
>VRL181000338
JX997182
Phycodnaviridae
Paramecium bursaria Chlorella virus NY-2B (JX997182)
169407
169490
+
Leu
CAA
[ENA]
¡û
Identical group No.219451 (1 seq.)
>VRL181000588
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
168820
168903
+
Leu
CAA
[ENA]
¡û
Identical group No.222909 (1 seq.)
>VRL183000108
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
92010
92090
+
Leu
CAA
[ENA]
¡û
Identical group No.224295 (1 seq.)
>VRL0100056
U42580
Phycodnaviridae
Paramecium bursaria Chlorella virus 1
164916
164996
+
Leu
CAA
[ENA]
¡û
Identical group No.226722 (1 seq.)
>VRL183000091
JX997176
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-1 (JX997176)
231813
231894
+
Leu
CAA
[ENA]
¡û
Identical group No.228516 (1 seq.)
>VRL181000596
KY322437
Phycodnaviridae
Tetraselmis virus 1 (KY322437)
373123
373205
+
Leu
CAA
[ENA]
¡û
Identical group No.230959 (1 seq.)
>VRL181000385
KC662249
Phycodnaviridae
Phaeocystis globosa virus 16T (KC662249)
176759
176838
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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