This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Phycodnaviridae
Anticodon = CTT
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247525 (3 seq.)
>VRL181000250
JX997170
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-5-2s1 (JX997170)
176505
176580
+
Lys
CTT
[ENA]
¡û
>VRL181000342
JX997182
Phycodnaviridae
Paramecium bursaria Chlorella virus NY-2B (JX997182)
170068
170143
+
Lys
CTT
[ENA]
¡û
>VRL181000347
JX997183
Phycodnaviridae
Paramecium bursaria Chlorella virus NYs1 (JX997183)
181972
182047
+
Lys
CTT
[ENA]
¡û
Identical group No.261433 (1 seq.)
>VRL0100094
DQ491002
Phycodnaviridae
Paramecium bursaria Chlorella virus NY2A
195382
195457
+
Lys
CTT
[ENA]
¡û
Identical group No.460840 (7 seq.)
>VRL0100026
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
1541
1615
+
Lys
CTT
[ENA]
¡û
>VRL181000178
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
152436
152510
+
Lys
CTT
[ENA]
¡û
>VRL181000206
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154280
154354
+
Lys
CTT
[ENA]
¡û
>VRL181000241
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
159712
159786
+
Lys
CTT
[ENA]
¡û
>VRL181000255
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129376
129450
+
Lys
CTT
[ENA]
¡û
>VRL181000266
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
134788
134862
+
Lys
CTT
[ENA]
¡û
>VRL181000276
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
158504
158578
+
Lys
CTT
[ENA]
¡û
Identical group No.480666 (6 seq.)
>VRL181000121
JX997155
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Br0604L (JX997155)
90896
90970
+
Lys
CTT
[ENA]
¡û
>VRL181000130
JX997156
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Can0610SP (JX997156)
89567
89639
+
Lys
CTT
[ENA]
¡û
>VRL181000303
JX997177
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-2 (JX997177)
107077
107151
+
Lys
CTT
[ENA]
¡û
>VRL181000311
JX997178
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-3 (JX997178)
87816
87890
+
Lys
CTT
[ENA]
¡û
>VRL181000360
JX997185
Phycodnaviridae
Acanthocystis turfacea Chlorella virus OR0704.3 (JX997185)
84585
84657
+
Lys
CTT
[ENA]
¡û
>VRL181000368
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
91500
91574
+
Lys
CTT
[ENA]
¡û
Identical group No.480669 (1 seq.)
>VRL181000586
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
167364
167438
+
Lys
CTT
[ENA]
¡û
Identical group No.489575 (9 seq.)
>VRL0100089
DQ491001
Phycodnaviridae
Paramecium bursaria chlorella virus MT325
135262
135334
+
Lys
CTT
[ENA]
¡û
>VRL0100110
DQ890022
Phycodnaviridae
Paramecium bursaria Chlorella virus FR483
142504
142576
+
Lys
CTT
[ENA]
¡û
>VRL181000115
JX997154
Phycodnaviridae
Paramecium bursaria Chlorella virus AP110A (JX997154)
142892
142964
+
Lys
CTT
[ENA]
¡û
>VRL181000155
JX997159
Phycodnaviridae
Paramecium bursaria Chlorella virus CVA-1 (JX997159)
140969
141041
+
Lys
CTT
[ENA]
¡û
>VRL181000170
JX997161
Phycodnaviridae
Paramecium bursaria Chlorella virus CVG-1 (JX997161)
141746
141818
+
Lys
CTT
[ENA]
¡û
>VRL181000190
JX997163
Phycodnaviridae
Paramecium bursaria Chlorella virus CVM-1 (JX997163)
152531
152603
+
Lys
CTT
[ENA]
¡û
>VRL181000198
JX997164
Phycodnaviridae
Paramecium bursaria Chlorella virus CVR-1 (JX997164)
144034
144106
+
Lys
CTT
[ENA]
¡û
>VRL181000218
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
114410
114482
+
Lys
CTT
[ENA]
¡û
>VRL181000352
JX997184
Phycodnaviridae
Paramecium bursaria Chlorella virus OR0704.2.2 (JX997184)
118582
118654
+
Lys
CTT
[ENA]
¡û
Identical group No.504364 (3 seq.)
>VRL0100116
EF101928
Phycodnaviridae
Acanthocystis turfacea Chlorella virus 1
84456
84528
+
Lys
CTT
[ENA]
¡û
>VRL181000290
JX997175
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MO0605SPH (JX997175)
92595
92667
+
Lys
CTT
[ENA]
¡û
>VRL181000376
JX997187
Phycodnaviridae
Acanthocystis turfacea Chlorella virus WI0606 (JX997187)
93876
93948
+
Lys
CTT
[ENA]
¡û
Identical group No.549119 (1 seq.)
>VRL181000139
JX997157
Phycodnaviridae
Paramecium bursaria Chlorella virus Can18-4 (JX997157)
142586
142658
+
Lys
CTT
[ENA]
¡û
Identical group No.549121 (10 seq.)
>VRL0100009
AB011501
Phycodnaviridae
Paramecium bursaria Chlorella virus CVK2
938
1012
+
Lys
CTT
[ENA]
¡û
>VRL0100017
AB011502
Phycodnaviridae
Paramecium bursaria Chlorella virus UW1
734
808
+
Lys
CTT
[ENA]
¡û
>VRL0100019
AB011502
Phycodnaviridae
Paramecium bursaria Chlorella virus UW1
908
982
+
Lys
CTT
[ENA]
¡û
>VRL181000054
JF411744
Phycodnaviridae
Paramecium bursaria Chlorella virus 1 (JF411744)
165503
165577
+
Lys
CTT
[ENA]
¡û
>VRL181000181
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
152816
152890
+
Lys
CTT
[ENA]
¡û
>VRL181000209
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154660
154734
+
Lys
CTT
[ENA]
¡û
>VRL181000243
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
159887
159961
+
Lys
CTT
[ENA]
¡û
>VRL181000258
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129756
129830
+
Lys
CTT
[ENA]
¡û
>VRL181000279
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
158884
158958
+
Lys
CTT
[ENA]
¡û
>VRL181000323
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
168080
168154
+
Lys
CTT
[ENA]
¡û
Identical group No.561416 (1 seq.)
>VRL181000145
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95356
95430
+
Lys
CTT
[ENA]
¡û
Identical group No.575103 (2 seq.)
>VRL0100034
AB011504
Phycodnaviridae
Paramecium bursaria Chlorella virus T16
559
633
+
Lys
CTT
[ENA]
¡û
>VRL0100059
U42580
Phycodnaviridae
Paramecium bursaria Chlorella virus 1
165300
165374
+
Lys
CTT
[ENA]
¡û
Identical group No.575104 (1 seq.)
>VRL0100061
U42580
Phycodnaviridae
Paramecium bursaria Chlorella virus 1
165474
165548
+
Lys
CTT
[ENA]
¡û
Identical group No.601793 (1 seq.)
>VRL181000106
JX997153
Phycodnaviridae
Paramecium bursaria Chlorella virus AN69C (JX997153)
165801
165875
+
Lys
CTT
[ENA]
¡û
Identical group No.604023 (1 seq.)
>VRL0100006
AB011501
Phycodnaviridae
Paramecium bursaria Chlorella virus CVK2
559
633
+
Lys
CTT
[ENA]
¡û
Identical group No.611166 (1 seq.)
>VRL181000321
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
167758
167832
+
Lys
CTT
[ENA]
¡û
Identical group No.627216 (1 seq.)
>VRL181000162
JX997160
Phycodnaviridae
Paramecium bursaria Chlorella virus CVB-1 (JX997160)
148241
148313
+
Lys
CTT
[ENA]
¡û
Identical group No.627217 (2 seq.)
>VRL181000222
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
129279
129351
+
Lys
CTT
[ENA]
¡û
>VRL181000336
JX997181
Phycodnaviridae
Paramecium bursaria Chlorella virus NW665.2 (JX997181)
131081
131153
+
Lys
CTT
[ENA]
¡û
Identical group No.638984 (1 seq.)
>VRL181000052
JF411744
Phycodnaviridae
Paramecium bursaria Chlorella virus 1 (JF411744)
165330
165403
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK