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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Phycodnaviridae
Anticodon = GTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669893 (9 seq.)
>VRL0100114
EF101928
Phycodnaviridae
Acanthocystis turfacea Chlorella virus 1
83991
84062
+
Asp
GTC
[ENA]
¡û
>VRL181000120
JX997155
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Br0604L (JX997155)
90718
90789
+
Asp
GTC
[ENA]
¡û
>VRL181000230
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
90474
90545
+
Asp
GTC
[ENA]
¡û
>VRL181000288
JX997175
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MO0605SPH (JX997175)
92225
92296
+
Asp
GTC
[ENA]
¡û
>VRL181000302
JX997177
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-2 (JX997177)
106803
106874
+
Asp
GTC
[ENA]
¡û
>VRL181000310
JX997178
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-3 (JX997178)
87542
87613
+
Asp
GTC
[ENA]
¡û
>VRL181000358
JX997185
Phycodnaviridae
Acanthocystis turfacea Chlorella virus OR0704.3 (JX997185)
84217
84288
+
Asp
GTC
[ENA]
¡û
>VRL181000367
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
91321
91392
+
Asp
GTC
[ENA]
¡û
>VRL181000374
JX997187
Phycodnaviridae
Acanthocystis turfacea Chlorella virus WI0606 (JX997187)
93506
93577
+
Asp
GTC
[ENA]
¡û
Identical group No.669895 (1 seq.)
>VRL181000587
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
168747
168819
+
Asp
GTC
[ENA]
¡û
Identical group No.703701 (1 seq.)
>VRL181000128
JX997156
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Can0610SP (JX997156)
89199
89270
+
Asp
GTC
[ENA]
¡û
Identical group No.711655 (4 seq.)
>VRL181000183
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
153017
153089
+
Asp
GTC
[ENA]
¡û
>VRL181000211
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154861
154933
+
Asp
GTC
[ENA]
¡û
>VRL181000260
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129957
130029
+
Asp
GTC
[ENA]
¡û
>VRL181000281
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
159085
159157
+
Asp
GTC
[ENA]
¡û
Identical group No.719259 (1 seq.)
>VRL181000147
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95550
95621
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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