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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Phycodnaviridae
Anticodon = TAA
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74550 (2 seq.)
>VRL181000304
JX997177
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-2 (JX997177)
107394
107479
+
Leu
TAA
[ENA]
¡û
>VRL181000313
JX997178
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-3 (JX997178)
88133
88218
+
Leu
TAA
[ENA]
¡û
Identical group No.76153 (6 seq.)
>VRL0100118
EF101928
Phycodnaviridae
Acanthocystis turfacea Chlorella virus 1
84773
84858
+
Leu
TAA
[ENA]
¡û
>VRL181000123
JX997155
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Br0604L (JX997155)
91212
91297
+
Leu
TAA
[ENA]
¡û
>VRL181000292
JX997175
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MO0605SPH (JX997175)
92912
92997
+
Leu
TAA
[ENA]
¡û
>VRL181000362
JX997185
Phycodnaviridae
Acanthocystis turfacea Chlorella virus OR0704.3 (JX997185)
84901
84986
+
Leu
TAA
[ENA]
¡û
>VRL181000370
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
91897
91982
+
Leu
TAA
[ENA]
¡û
>VRL181000378
JX997187
Phycodnaviridae
Acanthocystis turfacea Chlorella virus WI0606 (JX997187)
94193
94278
+
Leu
TAA
[ENA]
¡û
Identical group No.86333 (1 seq.)
>VRL181000284
JX997174
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MN0810.1 (JX997174)
102696
102782
+
Leu
TAA
[ENA]
¡û
Identical group No.97638 (2 seq.)
>VRL0100095
DQ491003
Phycodnaviridae
Paramecium bursaria Chlorella virus AR158
172099
172184
+
Leu
TAA
[ENA]
¡û
>VRL181000343
JX997183
Phycodnaviridae
Paramecium bursaria Chlorella virus NYs1 (JX997183)
180325
180410
+
Leu
TAA
[ENA]
¡û
Identical group No.107806 (1 seq.)
>VRL182000012
JX997176
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-1 (JX997176)
230307
230393
+
Leu
TAA
[ENA]
¡û
Identical group No.107807 (2 seq.)
>VRL182000002
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
113563
113648
+
Leu
TAA
[ENA]
¡û
>VRL182000015
JX997184
Phycodnaviridae
Paramecium bursaria Chlorella virus OR0704.2.2 (JX997184)
117089
117174
+
Leu
TAA
[ENA]
¡û
Identical group No.108787 (1 seq.)
>VRL182000004
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
128723
128808
+
Leu
TAA
[ENA]
¡û
Identical group No.119605 (3 seq.)
>VRL0100085
DQ491001
Phycodnaviridae
Paramecium bursaria chlorella virus MT325
134610
134694
+
Leu
TAA
[ENA]
¡û
>VRL181000135
JX997157
Phycodnaviridae
Paramecium bursaria Chlorella virus Can18-4 (JX997157)
141934
142018
+
Leu
TAA
[ENA]
¡û
>VRL181000158
JX997160
Phycodnaviridae
Paramecium bursaria Chlorella virus CVB-1 (JX997160)
146600
146684
+
Leu
TAA
[ENA]
¡û
Identical group No.122559 (7 seq.)
>VRL0100105
DQ890022
Phycodnaviridae
Paramecium bursaria Chlorella virus FR483
141945
142029
+
Leu
TAA
[ENA]
¡û
>VRL181000110
JX997154
Phycodnaviridae
Paramecium bursaria Chlorella virus AP110A (JX997154)
142235
142319
+
Leu
TAA
[ENA]
¡û
>VRL181000150
JX997159
Phycodnaviridae
Paramecium bursaria Chlorella virus CVA-1 (JX997159)
140314
140398
+
Leu
TAA
[ENA]
¡û
>VRL181000165
JX997161
Phycodnaviridae
Paramecium bursaria Chlorella virus CVG-1 (JX997161)
141091
141175
+
Leu
TAA
[ENA]
¡û
>VRL181000185
JX997163
Phycodnaviridae
Paramecium bursaria Chlorella virus CVM-1 (JX997163)
151875
151959
+
Leu
TAA
[ENA]
¡û
>VRL181000193
JX997164
Phycodnaviridae
Paramecium bursaria Chlorella virus CVR-1 (JX997164)
143379
143463
+
Leu
TAA
[ENA]
¡û
>VRL181000331
JX997181
Phycodnaviridae
Paramecium bursaria Chlorella virus NW665.2 (JX997181)
129585
129669
+
Leu
TAA
[ENA]
¡û
Identical group No.126440 (1 seq.)
>VRL181000070
JN225873
Phycodnaviridae
Ostreococcus tauri virus RT-2011 (JN225873)
162082
162167
+
Leu
TAA
[ENA]
¡û
Identical group No.136629 (1 seq.)
>VRL181000389
KC662249
Phycodnaviridae
Phaeocystis globosa virus 16T (KC662249)
409206
409291
+
Leu
TAA
[ENA]
¡û
Identical group No.136630 (1 seq.)
>VRL181000391
KC662249
Phycodnaviridae
Phaeocystis globosa virus 16T (KC662249)
409393
409476
+
Leu
TAA
[ENA]
¡û
Identical group No.153534 (1 seq.)
>VRL181000594
KY322437
Phycodnaviridae
Tetraselmis virus 1 (KY322437)
372926
373011
+
Leu
TAA
[ENA]
¡û
Identical group No.157065 (3 seq.)
>VRL181000580
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
166543
166628
+
Leu
TAA
[ENA]
¡û
>VRL181000581
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
166734
166819
+
Leu
TAA
[ENA]
¡û
>VRL181000582
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
166925
167010
+
Leu
TAA
[ENA]
¡û
Identical group No.160099 (13 seq.)
>VRL0100002
AB011501
Phycodnaviridae
Paramecium bursaria Chlorella virus CVK2
204
286
+
Leu
TAA
[ENA]
¡û
>VRL0100012
AB011502
Phycodnaviridae
Paramecium bursaria Chlorella virus UW1
204
286
+
Leu
TAA
[ENA]
¡û
>VRL0100031
AB011504
Phycodnaviridae
Paramecium bursaria Chlorella virus T16
204
286
+
Leu
TAA
[ENA]
¡û
>VRL0100039
AB011505
Phycodnaviridae
Paramecium bursaria Chlorella virus T1
256
341
+
Leu
TAA
[ENA]
¡û
>VRL181000102
JX997153
Phycodnaviridae
Paramecium bursaria Chlorella virus AN69C (JX997153)
165447
165529
+
Leu
TAA
[ENA]
¡û
>VRL181000174
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
152082
152164
+
Leu
TAA
[ENA]
¡û
>VRL181000202
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
153926
154008
+
Leu
TAA
[ENA]
¡û
>VRL181000237
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
159358
159440
+
Leu
TAA
[ENA]
¡û
>VRL181000248
JX997170
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-5-2s1 (JX997170)
176047
176129
+
Leu
TAA
[ENA]
¡û
>VRL181000252
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
128939
129024
+
Leu
TAA
[ENA]
¡û
>VRL181000272
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
158150
158232
+
Leu
TAA
[ENA]
¡û
>VRL181000317
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
167404
167486
+
Leu
TAA
[ENA]
¡û
>VRL181000340
JX997182
Phycodnaviridae
Paramecium bursaria Chlorella virus NY-2B (JX997182)
169610
169692
+
Leu
TAA
[ENA]
¡û
Identical group No.164167 (1 seq.)
>VRL181000132
JX997156
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Can0610SP (JX997156)
89739
89821
+
Leu
TAA
[ENA]
¡û
Identical group No.164168 (1 seq.)
>VRL181000233
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
91029
91111
+
Leu
TAA
[ENA]
¡û
Identical group No.167542 (1 seq.)
>VRL181000148
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95676
95758
+
Leu
TAA
[ENA]
¡û
Identical group No.167543 (1 seq.)
>VRL181000263
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
134422
134504
+
Leu
TAA
[ENA]
¡û
Identical group No.181426 (7 seq.)
>WENV180399726
OBQO01021658
[OBQO] marine metagenome; ENVO:00002010
83
164
+
Leu
TAA
[ENA]
¢þ
>WENV170304840
CESI01083969
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2786
2867
+
Leu
TAA
[ENA]
¢þ
>WENV170328062
CESU01187751
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
668
749
+
Leu
TAA
[ENA]
¢þ
>WENV170824084
MDSY01069375
[MDSY] marine metagenome; seawater
583
502
-
Leu
TAA
[ENA]
¢þ
>VRL181000043
HQ632826
Phycodnaviridae
Micromonas pusilla virus 12T (HQ632826)
167305
167224
-
Leu
TAA
[ENA]
¡û
>WENV046470
AACY022599528
Marine microbial communities from Global Ocean Sampling (GOS)
757
841
+
Leu
TAA
[ENA]
>WENV054903
AACY023202929
Marine microbial communities from Global Ocean Sampling (GOS)
670
586
-
Leu
TAA
[ENA]
Identical group No.198334 (1 seq.)
>VRL181000519
KT820662
Phycodnaviridae
Chrysochromulina ericina virus (KT820662)
423766
423847
+
Leu
TAA
[ENA]
¡û
Identical group No.200801 (1 seq.)
>VRL181000443
KJ645900
Phycodnaviridae
Aureococcus anophagefferens virus (KJ645900)
322252
322333
+
Leu
TAA
[ENA]
¡û
Identical group No.206379 (4 seq.)
>WENV170505141
CEVW01031980
[CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3508
3591
+
Leu
TAA
[ENA]
¢þ
>WENV170533307
CEWO01116666
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
213
130
-
Leu
TAA
[ENA]
¢þ
>WENV170812137
MDSW01178405
[MDSW] marine metagenome; seawater
736
819
+
Leu
TAA
[ENA]
¢þ
>VRL181000030
HM004429
Phycodnaviridae
Micromonas sp. RCC1109 virus MpV1 (HM004429)
157972
158055
+
Leu
TAA
[ENA]
¡û
Identical group No.216700 (1 seq.)
>VRL181000537
KX008963
Phycodnaviridae
Heterosigma akashiwo virus 01 (KX008963)
88956
88873
-
Leu
TAA
[ENA]
¡û
Identical group No.218389 (1 seq.)
>VRL0200004
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
207
287
+
Leu
TAA
[ENA]
¡û
Identical group No.223587 (1 seq.)
>VRL185000082
JX997180
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NTS-1 (JX997180)
105135
105215
+
Leu
TAA
[ENA]
¡û
Identical group No.225468 (1 seq.)
>VRL0200066
DQ491002
Phycodnaviridae
Paramecium bursaria Chlorella virus NY2A
194698
194778
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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