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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
Anticodon = GGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462253 (15 seq.)
>WENV180693965
OCZS011803693
[OCZS] soil metagenome; soil
188
116
-
Ala
GGC
[ENA]
¢þ
>WENV181315943
OFJR01005129
[OFJR] marine metagenome; seawater
167
239
+
Ala
GGC
[ENA]
¢þ
>WENV183661050
ORJL010078193
[ORJL] groundwater metagenome; groundwater
3841
3916
+
Ala
GGC
[ENA]
¢þ
>WENV183667835
ORJL010685525
[ORJL] groundwater metagenome; groundwater
687
612
-
Ala
GGC
[ENA]
¢þ
>WENV183675809
ORJL011551876
[ORJL] groundwater metagenome; groundwater
645
570
-
Ala
GGC
[ENA]
¢þ
>WENV183683114
ORMF010533493
[ORMF] groundwater metagenome; groundwater
494
569
+
Ala
GGC
[ENA]
¢þ
>WENV170682953
LFIK01002984
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6934
6861
-
Ala
GGC
[ENA]
¢þ
>WENV170714837
LNFM01106112
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
75
150
+
Ala
GGC
[ENA]
¢þ
>WENV170770794
LXNI01000075
[LXNI] sponge metagenome; marine sponge reef
103339
103266
-
Ala
GGC
[ENA]
¢þ
>WENV170772658
LXNJ01000234
[LXNJ] sponge metagenome; marine sponge reef
38457
38529
+
Ala
GGC
[ENA]
¢þ
>WENV170957501
MKWU01000036
[MKWU] sponge metagenome;
119944
119872
-
Ala
GGC
[ENA]
¢þ
>WENV170990421
MWWA01005627
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1373
1299
-
Ala
GGC
[ENA]
¢þ
>W1910913983
NHRY01000277
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
48459
48384
-
Ala
GGC
[ENA]
¡û
>W1911718249
QQWF01001031
Bacillota
Lacticaseibacillus rhamnosus NRRL B-442 [QQWF]
25
100
+
Ala
GGC
[ENA]
¡û
>SRA1013222
SRR020514.76209
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
137
64
-
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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