tRNA genes clustered and arranged according to each identical group

Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)

Anticodon = GGG

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.294820 (32 seq.)
>WENV170139493 CENX01014662 [CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2031 2105 + Pro GGG [ENA] ¢þ
>WENV170154279 CEOF01189639 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 888 962 + Pro GGG [ENA] ¢þ
>WENV170168567 CEOP01103321 [CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1306 1380 + Pro GGG [ENA] ¢þ
>WENV170173793 CEOQ01244032 [CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 95 171 + Pro GGG [ENA] ¢þ
>WENV170179332 CEOV01163652 [CEOV] marine metagenome genome assembly TARA_062_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 219 293 + Pro GGG [ENA] ¢þ
>WENV170182799 CEOY01014263 [CEOY] marine metagenome genome assembly TARA_056_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 102 28 - Pro GGG [ENA] ¢þ
>WENV170186166 CEPA01023019 [CEPA] marine metagenome genome assembly TARA_052_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 8769 8843 + Pro GGG [ENA] ¢þ
>WENV170198082 CEPK01219264 [CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 268 194 - Pro GGG [ENA] ¢þ
>WENV170237113 CEQM01031228 [CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 874 948 + Pro GGG [ENA] ¢þ
>WENV170285450 CERV01232093 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 762 836 + Pro GGG [ENA] ¢þ
>WENV170323037 CESR01233614 [CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 226 300 + Pro GGG [ENA] ¢þ
>WENV170345091 CETE01175384 [CETE] marine metagenome genome assembly TARA_109_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 341 267 - Pro GGG [ENA] ¢þ
>WENV170349600 CETH01032126 [CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2109 2035 - Pro GGG [ENA] ¢þ
>WENV170360713 CETL01136879 [CETL] marine metagenome genome assembly TARA_112_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1064 1138 + Pro GGG [ENA] ¢þ
>WENV170375938 CETU01027838 [CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 323 249 - Pro GGG [ENA] ¢þ
>WENV170391042 CEUA01192927 [CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 264 338 + Pro GGG [ENA] ¢þ
>WENV170404358 CEUF01283437 [CEUF] marine metagenome genome assembly TARA_138_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 219 293 + Pro GGG [ENA] ¢þ
>WENV170407713 CEUH01177965 [CEUH] marine metagenome genome assembly TARA_137_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 467 541 + Pro GGG [ENA] ¢þ
>WENV170435332 CEUS01418232 [CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 296 222 - Pro GGG [ENA] ¢þ
>WENV170438210 CEUU01107160 [CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 117 43 - Pro GGG [ENA] ¢þ
>WENV170442668 CEUW01057672 [CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 250 176 - Pro GGG [ENA] ¢þ
>WENV170481843 CEVL01357578 [CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 876 950 + Pro GGG [ENA] ¢þ
>WENV170484504 CEVN01026226 [CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 323 249 - Pro GGG [ENA] ¢þ
>WENV170495591 CEVR01297967 [CEVR] marine metagenome genome assembly TARA_148_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 118 44 - Pro GGG [ENA] ¢þ
>WENV170533899 CEWO01173565 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 489 563 + Pro GGG [ENA] ¢þ
>WENV170608931 FUWD011176852 [FUWD] metagenome; unknown 121 47 - Pro GGG [ENA] ¢þ
>WENV170809660 MDSW01136080 [MDSW] marine metagenome; seawater 968 894 - Pro GGG [ENA] ¢þ
>WENV170838103 MDSZ01161599 [MDSZ] marine metagenome; seawater 2902 2976 + Pro GGG [ENA] ¢þ
>WENV170891264 MDTD01021459 [MDTD] marine metagenome; seawater 85 11 - Pro GGG [ENA] ¢þ
>SRA1013290 SRR020514.124329 Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048) 37 111 + Pro GGG [SRA]
>WENV044941 AACY022467945 Marine microbial communities from Global Ocean Sampling (GOS) 543 619 + Pro GGG [ENA]
>WENV045619 AACY022534787 Marine microbial communities from Global Ocean Sampling (GOS) 754 678 - Pro GGG [ENA]
Identical group No.300087 (16 seq.)
>W1710791194 LJNL01000015 Gammaproteobacteria Gammaproteobacteria bacterium SG8_15 [LJNL] 12189 12113 - Pro GGG [ENA] ¡û
>WENV180060537 MPLX02174232 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 1986 1910 - Pro GGG [ENA] ¢þ
>WENV180073196 MPMA02066777 [MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter 1016 1092 + Pro GGG [ENA] ¢þ
>WENV180077730 MPMB02066650 [MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter 1705 1781 + Pro GGG [ENA] ¢þ
>WENV180090930 MPMF02165637 [MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter 9581 9657 + Pro GGG [ENA] ¢þ
>WENV180581167 OCMH01046442 [OCMH] metagenome; diffuse fluid 117 41 - Pro GGG [ENA] ¢þ
>WENV181304586 OFIA01006865 [OFIA] marine metagenome; seawater 402 478 + Pro GGG [ENA] ¢þ
>WENV170320604 CESR01000415 [CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 24853 24777 - Pro GGG [ENA] ¢þ
>WENV170337169 CETA01078962 [CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 618 542 - Pro GGG [ENA] ¢þ
>WENV170394591 CEUC01041939 [CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 9217 9141 - Pro GGG [ENA] ¢þ
>WENV170398147 CEUD01123363 [CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 949 1025 + Pro GGG [ENA] ¢þ
>WENV170433885 CEUS01218179 [CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 334 258 - Pro GGG [ENA] ¢þ
>WENV170456580 CEVA01216332 [CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 388 464 + Pro GGG [ENA] ¢þ
>WENV170880055 MDTC01105543 [MDTC] marine metagenome; seawater 3220 3296 + Pro GGG [ENA] ¢þ
>SRA1013292 SRR020514.124897 Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048) 163 87 - Pro GGG [SRA]
>W1610655119 LJNL01000015 Gammaproteobacteria Gammaproteobacteria bacterium SG8_15 [LJNL] 12189 12113 - Pro GGG [ENA] ¡û
Identical group No.303974 (14 seq.)
>W1711127457 LUQK01000419 Unclassified SAR324 cluster bacterium REDSEA-S14_B10 [LUQK] 778 854 + Pro GGG [ENA] ¡û
>WENV180061073 MPLX02206205 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 746 822 + Pro GGG [ENA] ¢þ
>WENV183807406 PVBE011197929 [PVBE] marine metagenome; water 1009 1085 + Pro GGG [ENA] ¢þ
>WENV170191234 CEPD01001122 [CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 158 82 - Pro GGG [ENA] ¢þ
>WENV170203172 CEPS01030614 [CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 121 197 + Pro GGG [ENA] ¢þ
>WENV170208751 CEPV01013551 [CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3718 3794 + Pro GGG [ENA] ¢þ
>WENV170224548 CEQE01062682 [CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 740 664 - Pro GGG [ENA] ¢þ
>WENV170463626 CEVD01161946 [CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 322 246 - Pro GGG [ENA] ¢þ
>WENV170730200 LULG01020796 [LULG] marine metagenome; Red Sea water column Station 169 - depth 200m 494 570 + Pro GGG [ENA] ¢þ
>WENV170736717 LULM01021445 [LULM] marine metagenome; Red Sea water column Station 149 - depth 200m 593 669 + Pro GGG [ENA] ¢þ
>WENV170746063 LULZ01006077 [LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m 768 844 + Pro GGG [ENA] ¢þ
>WENV170749004 LUME01006730 [LUME] marine metagenome; Red Sea water column Station 34 - depth 200m 778 854 + Pro GGG [ENA] ¢þ
>SRA1013238 SRR020514.83144 Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048) 160 236 + Pro GGG [SRA]
>W1610938571 LUQK01000419 Unclassified SAR324 cluster bacterium REDSEA-S14_B10 [LUQK] 778 854 + Pro GGG [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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