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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
Anticodon = GTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305363 (9 seq.)
>WENV183809321
PVBE011376839
[PVBE] marine metagenome; water
104
180
+
Asp
GTC
[ENA]
¢þ
>WENV170394098
CEUC01009160
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
176
100
-
Asp
GTC
[ENA]
¢þ
>WENV170807182
MDSW01094266
[MDSW] marine metagenome; seawater
4314
4390
+
Asp
GTC
[ENA]
¢þ
>WENV170877142
MDTC01052480
[MDTC] marine metagenome; seawater
338
262
-
Asp
GTC
[ENA]
¢þ
>WENV170905175
MDTE01022009
[MDTE] marine metagenome; seawater
8315
8239
-
Asp
GTC
[ENA]
¢þ
>WENV170909031
MDTE01072756
[MDTE] marine metagenome; seawater
5
81
+
Asp
GTC
[ENA]
¢þ
>WENV170936283
MDTG01272450
[MDTG] marine metagenome; seawater
19352
19428
+
Asp
GTC
[ENA]
¢þ
>SRA1013318
SRR020514.139822
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
92
16
-
Asp
GTC
[SRA]
>WENV073779
AACY023937604
Marine microbial communities from Global Ocean Sampling (GOS)
324
246
-
Asp
GTC
[ENA]
Identical group No.339190 (5 seq.)
>WENV181416426
OGCL01085305
[OGCL] hot springs metagenome; Hot spring water
237
311
+
Asp
GTC
[ENA]
¢þ
>WENV170431926
CEUS01060021
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1672
1746
+
Asp
GTC
[ENA]
¢þ
>WENV170772657
LXNJ01000234
[LXNJ] sponge metagenome; marine sponge reef
38343
38417
+
Asp
GTC
[ENA]
¢þ
>WENV170957500
MKWU01000036
[MKWU] sponge metagenome;
120059
119985
-
Asp
GTC
[ENA]
¢þ
>SRA1013221
SRR020514.76209
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
248
175
-
Asp
GTC
[SRA]
Identical group No.407162 (1 seq.)
>SRA1013197
SRR020514.66716
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
230
305
+
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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