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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = AAT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281291 (15 seq.)
>R05100031
AP008207
Plant
Oryza sativa Japonica Group
36672210
36672288
+
Ile
AAT
[RAP-DB]
¡û
>R05100036
AP008207
Plant
Oryza sativa Japonica Group
40976914
40976992
+
Ile
AAT
[RAP-DB]
¡û
>R05100045
AP008207
Plant
Oryza sativa Japonica Group
44794395
44794319
-
Ile
AAT
[RAP-DB]
¡û
>R05100073
AP008207
Plant
Oryza sativa Japonica Group
27770808
27770730
-
Ile
AAT
[RAP-DB]
¡û
>R05100084
AP008217
Plant
Oryza sativa Japonica Group
255566
255642
+
Ile
AAT
[RAP-DB]
¡û
>R05100184
AP008208
Plant
Oryza sativa Japonica Group
23391184
23391260
+
Ile
AAT
[RAP-DB]
¡û
>R05100273
AP008209
Plant
Oryza sativa Japonica Group
15418971
15418895
-
Ile
AAT
[RAP-DB]
¡û
>R05100318
AP008210
Plant
Oryza sativa Japonica Group
23965012
23965090
+
Ile
AAT
[RAP-DB]
¡û
>R05100339
AP008210
Plant
Oryza sativa Japonica Group
26053478
26053402
-
Ile
AAT
[RAP-DB]
¡û
>R05100340
AP008210
Plant
Oryza sativa Japonica Group
25558879
25558801
-
Ile
AAT
[RAP-DB]
¡û
>R05100403
AP008211
Plant
Oryza sativa Japonica Group
23696886
23696810
-
Ile
AAT
[RAP-DB]
¡û
>R05100469
AP008213
Plant
Oryza sativa Japonica Group
26870979
26871055
+
Ile
AAT
[RAP-DB]
¡û
>R05100521
AP008214
Plant
Oryza sativa Japonica Group
21129152
21129074
-
Ile
AAT
[RAP-DB]
¡û
>R05100539
AP008215
Plant
Oryza sativa Japonica Group
19127017
19127095
+
Ile
AAT
[RAP-DB]
¡û
>R05100576
AP008216
Plant
Oryza sativa Japonica Group
18270228
18270304
+
Ile
AAT
[RAP-DB]
¡û
Identical group No.281292 (1 seq.)
>R05300077
AP008214
Plant
Oryza sativa Japonica Group
24556297
24556375
+
Ile
AAT
[RAP-DB]
¡û
Identical group No.352395 (9 seq.)
>AD01000007
NC_003070
Plant
Arabidopsis thaliana
1978084
1978157
+
Ile
AAT
[TAIR]
¡û
>AD01000091
NC_003070
Plant
Arabidopsis thaliana
25886535
25886610
+
Ile
AAT
[TAIR]
¡û
>AD01000145
NC_003070
Plant
Arabidopsis thaliana
4522783
4522708
-
Ile
AAT
[TAIR]
¡û
>AD01000171
NC_003071
Plant
Arabidopsis thaliana
7742711
7742786
+
Ile
AAT
[TAIR]
¡û
>AD01000233
NC_003074
Plant
Arabidopsis thaliana
469659
469734
+
Ile
AAT
[TAIR]
¡û
>AD01000351
NC_003075
Plant
Arabidopsis thaliana
18542170
18542245
+
Ile
AAT
[TAIR]
¡û
>AD01000406
NC_003076
Plant
Arabidopsis thaliana
15575856
15575931
+
Ile
AAT
[TAIR]
¡û
>AD01000419
NC_003076
Plant
Arabidopsis thaliana
22828131
22828204
+
Ile
AAT
[TAIR]
¡û
>AD01000434
NC_003076
Plant
Arabidopsis thaliana
26568397
26568472
+
Ile
AAT
[TAIR]
¡û
Identical group No.352396 (8 seq.)
>AD01000052
NC_003070
Plant
Arabidopsis thaliana
11104113
11104187
+
Ile
AAT
[TAIR]
¡û
>AD01000092
NC_003070
Plant
Arabidopsis thaliana
25989730
25989803
+
Ile
AAT
[TAIR]
¡û
>AD01000174
NC_003071
Plant
Arabidopsis thaliana
9502279
9502354
+
Ile
AAT
[TAIR]
¡û
>AD01000220
NC_003071
Plant
Arabidopsis thaliana
9449883
9449808
-
Ile
AAT
[TAIR]
¡û
>AD01000300
NC_003074
Plant
Arabidopsis thaliana
9372448
9372373
-
Ile
AAT
[TAIR]
¡û
>AD01000359
NC_003075
Plant
Arabidopsis thaliana
13341566
13341492
-
Ile
AAT
[TAIR]
¡û
>AD01000360
NC_003075
Plant
Arabidopsis thaliana
13336410
13336336
-
Ile
AAT
[TAIR]
¡û
>AD01000395
NC_003076
Plant
Arabidopsis thaliana
5157639
5157713
+
Ile
AAT
[TAIR]
¡û
Identical group No.447083 (1 seq.)
>R05100551
AP008215
Plant
Oryza sativa Japonica Group
15326034
15325958
-
Ile
AAT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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