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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = AGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324104 (8 seq.)
>R05100004
AP008207
Plant
Oryza sativa Japonica Group
1774493
1774571
+
Thr
AGT
[RAP-DB]
¡û
>R05100023
AP008207
Plant
Oryza sativa Japonica Group
34068952
34069028
+
Thr
AGT
[RAP-DB]
¡û
>R05100140
AP008218
Plant
Oryza sativa Japonica Group
27280318
27280242
-
Thr
AGT
[RAP-DB]
¡û
>R05100164
AP008218
Plant
Oryza sativa Japonica Group
3400481
3400405
-
Thr
AGT
[RAP-DB]
¡û
>R05100266
AP008209
Plant
Oryza sativa Japonica Group
32990624
32990548
-
Thr
AGT
[RAP-DB]
¡û
>R05100279
AP008209
Plant
Oryza sativa Japonica Group
6933321
6933245
-
Thr
AGT
[RAP-DB]
¡û
>R05100456
AP008213
Plant
Oryza sativa Japonica Group
1838994
1839070
+
Thr
AGT
[RAP-DB]
¡û
>R05100561
AP008216
Plant
Oryza sativa Japonica Group
340913
340989
+
Thr
AGT
[RAP-DB]
¡û
Identical group No.352390 (3 seq.)
>AD01000304
NC_003074
Plant
Arabidopsis thaliana
6484013
6483940
-
Thr
AGT
[TAIR]
¡û
>AD01000326
NC_003075
Plant
Arabidopsis thaliana
9108307
9108382
+
Thr
AGT
[TAIR]
¡û
>AD01000372
NC_003075
Plant
Arabidopsis thaliana
8301798
8301725
-
Thr
AGT
[TAIR]
¡û
Identical group No.352391 (5 seq.)
>AD01000212
NC_003071
Plant
Arabidopsis thaliana
14743548
14743475
-
Thr
AGT
[TAIR]
¡û
>AD01000328
NC_003075
Plant
Arabidopsis thaliana
9287209
9287282
+
Thr
AGT
[TAIR]
¡û
>AD01000356
NC_003075
Plant
Arabidopsis thaliana
15430297
15430224
-
Thr
AGT
[TAIR]
¡û
>AD01000367
NC_003075
Plant
Arabidopsis thaliana
10878797
10878724
-
Thr
AGT
[TAIR]
¡û
>AD01000409
NC_003076
Plant
Arabidopsis thaliana
18040788
18040861
+
Thr
AGT
[TAIR]
¡û
Identical group No.352393 (2 seq.)
>AD01000129
NC_003070
Plant
Arabidopsis thaliana
18230552
18230479
-
Thr
AGT
[TAIR]
¡û
>AD01000346
NC_003075
Plant
Arabidopsis thaliana
16655286
16655359
+
Thr
AGT
[TAIR]
¡û
Identical group No.408670 (2 seq.)
>R05100146
AP008218
Plant
Oryza sativa Japonica Group
22763305
22763229
-
Thr
AGT
[RAP-DB]
¡û
>R05100420
AP008211
Plant
Oryza sativa Japonica Group
3257485
3257409
-
Thr
AGT
[RAP-DB]
¡û
Identical group No.447080 (1 seq.)
>R05100197
AP008208
Plant
Oryza sativa Japonica Group
26439132
26439056
-
Thr
AGT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK