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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281290 (1 seq.)
>R05100516
AP008214
Plant
Oryza sativa Japonica Group
28091895
28091973
+
Val
CAC
[RAP-DB]
¡û
Identical group No.324094 (8 seq.)
>R05100035
AP008207
Plant
Oryza sativa Japonica Group
40465143
40465219
+
Val
CAC
[RAP-DB]
¡û
>R05100087
AP008217
Plant
Oryza sativa Japonica Group
1420150
1420226
+
Val
CAC
[RAP-DB]
¡û
>R05100092
AP008217
Plant
Oryza sativa Japonica Group
25437874
25437952
+
Val
CAC
[RAP-DB]
¡û
>R05100114
AP008218
Plant
Oryza sativa Japonica Group
1349214
1349290
+
Val
CAC
[RAP-DB]
¡û
>R05100247
AP008209
Plant
Oryza sativa Japonica Group
30746072
30746150
+
Val
CAC
[RAP-DB]
¡û
>R05100341
AP008210
Plant
Oryza sativa Japonica Group
25340065
25339989
-
Val
CAC
[RAP-DB]
¡û
>R05100556
AP008215
Plant
Oryza sativa Japonica Group
10192646
10192568
-
Val
CAC
[RAP-DB]
¡û
>R05100557
AP008215
Plant
Oryza sativa Japonica Group
10190418
10190342
-
Val
CAC
[RAP-DB]
¡û
Identical group No.352386 (1 seq.)
>R05100056
AP008207
Plant
Oryza sativa Japonica Group
38157639
38157563
-
Val
CAC
[RAP-DB]
¡û
Identical group No.352394 (7 seq.)
>AD01000173
NC_003071
Plant
Arabidopsis thaliana
9393670
9393743
+
Val
CAC
[TAIR]
¡û
>AD01000255
NC_003074
Plant
Arabidopsis thaliana
9839184
9839257
+
Val
CAC
[TAIR]
¡û
>AD01000350
NC_003075
Plant
Arabidopsis thaliana
18411264
18411339
+
Val
CAC
[TAIR]
¡û
>AD01000385
NC_003076
Plant
Arabidopsis thaliana
1804616
1804689
+
Val
CAC
[TAIR]
¡û
>AD01000394
NC_003076
Plant
Arabidopsis thaliana
4929560
4929633
+
Val
CAC
[TAIR]
¡û
>AD01000405
NC_003076
Plant
Arabidopsis thaliana
15225318
15225391
+
Val
CAC
[TAIR]
¡û
>AD01000441
NC_003076
Plant
Arabidopsis thaliana
23054844
23054771
-
Val
CAC
[TAIR]
¡û
Identical group No.393195 (1 seq.)
>AD01000246
NC_003074
Plant
Arabidopsis thaliana
3575844
3575917
+
Val
CAC
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK