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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CCC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782141 (1 seq.)
>R05100522
AP008214
Plant
Oryza sativa Japonica Group
20646262
20646189
-
Gly
CCC
[RAP-DB]
¡û
Identical group No.794869 (7 seq.)
>WENV170659684
JXWR01027758
[JXWR] soil metagenome; rice field; ambient CO2
489
419
-
Gly
CCC
[ENA]
¢þ
>R05100070
AP008207
Plant
Oryza sativa Japonica Group
31607298
31607225
-
Gly
CCC
[RAP-DB]
¡û
>R05100134
AP008218
Plant
Oryza sativa Japonica Group
21787711
21787784
+
Gly
CCC
[RAP-DB]
¡û
>R05100235
AP008209
Plant
Oryza sativa Japonica Group
12613081
12613154
+
Gly
CCC
[RAP-DB]
¡û
>R05100474
AP008213
Plant
Oryza sativa Japonica Group
29018632
29018559
-
Gly
CCC
[RAP-DB]
¡û
>R05100553
AP008215
Plant
Oryza sativa Japonica Group
14524559
14524486
-
Gly
CCC
[RAP-DB]
¡û
>WENV11100091
ADWX01121456
Ant fungus garden metagenome, Atta colombica fungus garden
273
343
+
Gly
CCC
[ENA]
¡û
Identical group No.803314 (1 seq.)
>R05100069
AP008207
Plant
Oryza sativa Japonica Group
31633578
31633503
-
Gly
CCC
[RAP-DB]
¡û
Identical group No.803315 (6 seq.)
>R05100173
AP008208
Plant
Oryza sativa Japonica Group
5610556
5610629
+
Gly
CCC
[RAP-DB]
¡û
>AD01000205
NC_003071
Plant
Arabidopsis thaliana
19559925
19559855
-
Gly
CCC
[TAIR]
¡û
>AD01000286
NC_003074
Plant
Arabidopsis thaliana
23210707
23210777
+
Gly
CCC
[TAIR]
¡û
>AD01000319
NC_003075
Plant
Arabidopsis thaliana
6646430
6646500
+
Gly
CCC
[TAIR]
¡û
>AD01000365
NC_003075
Plant
Arabidopsis thaliana
12486272
12486202
-
Gly
CCC
[TAIR]
¡û
>AD01000444
NC_003076
Plant
Arabidopsis thaliana
21723184
21723114
-
Gly
CCC
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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