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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462870 (4 seq.)
>R05100334
AP008210
Plant
Oryza sativa Japonica Group
31897648
31897571
-
Arg
CCG
[RAP-DB]
¡û
>R05100495
AP008214
Plant
Oryza sativa Japonica Group
5866787
5866864
+
Arg
CCG
[RAP-DB]
¡û
>R05100519
AP008214
Plant
Oryza sativa Japonica Group
27958457
27958382
-
Arg
CCG
[RAP-DB]
¡û
>R05100546
AP008215
Plant
Oryza sativa Japonica Group
23300803
23300726
-
Arg
CCG
[RAP-DB]
¡û
Identical group No.541258 (1 seq.)
>R05100033
AP008207
Plant
Oryza sativa Japonica Group
37746144
37746221
+
Arg
CCG
[RAP-DB]
¡û
Identical group No.560574 (2 seq.)
>WENV170659743
JXWR01065169
[JXWR] soil metagenome; rice field; ambient CO2
444
518
+
Arg
CCG
[ENA]
¢þ
>R05100321
AP008210
Plant
Oryza sativa Japonica Group
26331950
26332027
+
Arg
CCG
[RAP-DB]
¡û
Identical group No.587038 (1 seq.)
>AD01000238
NC_003074
Plant
Arabidopsis thaliana
1220228
1220302
+
Arg
CCG
[TAIR]
¡û
Identical group No.587044 (1 seq.)
>AD01000306
NC_003074
Plant
Arabidopsis thaliana
3995170
3995094
-
Arg
CCG
[TAIR]
¡û
Identical group No.622086 (1 seq.)
>R05100406
AP008211
Plant
Oryza sativa Japonica Group
22718192
22718117
-
Arg
CCG
[RAP-DB]
¡û
Identical group No.641893 (2 seq.)
>AD01000103
NC_003070
Plant
Arabidopsis thaliana
29804122
29804196
+
Arg
CCG
[TAIR]
¡û
>AD01000141
NC_003070
Plant
Arabidopsis thaliana
5619543
5619471
-
Arg
CCG
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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