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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510281 (6 seq.)
>R05100074
AP008207
Plant
Oryza sativa Japonica Group
26960584
26960509
-
Arg
CCT
[RAP-DB]
¡û
>R05100104
AP008217
Plant
Oryza sativa Japonica Group
24837722
24837647
-
Arg
CCT
[RAP-DB]
¡û
>R05100141
AP008218
Plant
Oryza sativa Japonica Group
27199947
27199872
-
Arg
CCT
[RAP-DB]
¡û
>R05100165
AP008218
Plant
Oryza sativa Japonica Group
3358875
3358800
-
Arg
CCT
[RAP-DB]
¡û
>R05100270
AP008209
Plant
Oryza sativa Japonica Group
27267833
27267758
-
Arg
CCT
[RAP-DB]
¡û
>R05100394
AP008211
Plant
Oryza sativa Japonica Group
29044287
29044362
+
Arg
CCT
[RAP-DB]
¡û
Identical group No.510288 (1 seq.)
>R05100269
AP008209
Plant
Oryza sativa Japonica Group
30237108
30237033
-
Arg
CCT
[RAP-DB]
¡û
Identical group No.510289 (7 seq.)
>R05100280
AP008209
Plant
Oryza sativa Japonica Group
6830587
6830512
-
Arg
CCT
[RAP-DB]
¡û
>R05100562
AP008216
Plant
Oryza sativa Japonica Group
346853
346928
+
Arg
CCT
[RAP-DB]
¡û
>AD01000062
NC_003070
Plant
Arabidopsis thaliana
18387802
18387874
+
Arg
CCT
[TAIR]
¡û
>AD01000245
NC_003074
Plant
Arabidopsis thaliana
3535146
3535218
+
Arg
CCT
[TAIR]
¡û
>AD01000253
NC_003074
Plant
Arabidopsis thaliana
6663708
6663780
+
Arg
CCT
[TAIR]
¡û
>AD01000383
NC_003076
Plant
Arabidopsis thaliana
1742692
1742764
+
Arg
CCT
[TAIR]
¡û
>AD01000433
NC_003076
Plant
Arabidopsis thaliana
26195459
26195532
+
Arg
CCT
[TAIR]
¡û
Identical group No.541270 (1 seq.)
>AD01000355
NC_003075
Plant
Arabidopsis thaliana
16454769
16454697
-
Arg
CCT
[TAIR]
¡û
Identical group No.597243 (1 seq.)
>AD01000389
NC_003076
Plant
Arabidopsis thaliana
3324702
3324774
+
Arg
CCT
[TAIR]
¡û
Identical group No.826678 (1 seq.)
>R05300057
AP008211
Plant
Oryza sativa Japonica Group
18556472
18556545
+
Arg
CCT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK