This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CGA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15851 (6 seq.)
>R05900019
AP008208
Plant
Oryza sativa Japonica Group
15030777
15031532
+
Ser
CGA
[RAP-DB]
¡û
>R05900034
AP008210
Plant
Oryza sativa Japonica Group
9228813
9228058
-
Ser
CGA
[RAP-DB]
¡û
>R05900037
AP008210
Plant
Oryza sativa Japonica Group
9415715
9414960
-
Ser
CGA
[RAP-DB]
¡û
>R05900077
AP008216
Plant
Oryza sativa Japonica Group
11219032
11218277
-
Ser
CGA
[RAP-DB]
¡û
>R05900005
AP008207
Plant
Oryza sativa Japonica Group
7761970
7761215
-
Ser
CGA
[RAP-DB]
¡û
>R05900008
AP008207
Plant
Oryza sativa Japonica Group
35302189
35301435
-
Ser
CGA
[RAP-DB]
¡û
Identical group No.190918 (4 seq.)
>R05100072
AP008207
Plant
Oryza sativa Japonica Group
29478978
29478894
-
Ser
CGA
[RAP-DB]
¡û
>R05100259
AP008209
Plant
Oryza sativa Japonica Group
36259195
36259111
-
Ser
CGA
[RAP-DB]
¡û
>R05100393
AP008211
Plant
Oryza sativa Japonica Group
27981503
27981587
+
Ser
CGA
[RAP-DB]
¡û
>R05100409
AP008211
Plant
Oryza sativa Japonica Group
20984423
20984337
-
Ser
CGA
[RAP-DB]
¡û
Identical group No.196787 (2 seq.)
>AD01000242
NC_003074
Plant
Arabidopsis thaliana
2944612
2944693
+
Ser
CGA
[TAIR]
¡û
>AD01000343
NC_003075
Plant
Arabidopsis thaliana
15804548
15804631
+
Ser
CGA
[TAIR]
¡û
Identical group No.201396 (1 seq.)
>R05100444
AP008212
Plant
Oryza sativa Japonica Group
13395414
13395328
-
Ser
CGA
[RAP-DB]
¡û
Identical group No.207303 (1 seq.)
>AD01000380
NC_003076
Plant
Arabidopsis thaliana
614644
614725
+
Ser
CGA
[TAIR]
¡û
Identical group No.207305 (1 seq.)
>AD01000421
NC_003076
Plant
Arabidopsis thaliana
23644710
23644793
+
Ser
CGA
[TAIR]
¡û
Identical group No.217060 (1 seq.)
>R05100214
AP008208
Plant
Oryza sativa Japonica Group
10299911
10299825
-
Ser
CGA
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK