This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CGC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462873 (6 seq.)
>R05100014
AP008207
Plant
Oryza sativa Japonica Group
14597308
14597385
+
Ala
CGC
[RAP-DB]
¡û
>R05100183
AP008208
Plant
Oryza sativa Japonica Group
22274547
22274624
+
Ala
CGC
[RAP-DB]
¡û
>R05100195
AP008208
Plant
Oryza sativa Japonica Group
33108541
33108464
-
Ala
CGC
[RAP-DB]
¡û
>R05100316
AP008210
Plant
Oryza sativa Japonica Group
22700075
22700150
+
Ala
CGC
[RAP-DB]
¡û
>R05100507
AP008214
Plant
Oryza sativa Japonica Group
22282249
22282326
+
Ala
CGC
[RAP-DB]
¡û
>R05100538
AP008215
Plant
Oryza sativa Japonica Group
16875649
16875726
+
Ala
CGC
[RAP-DB]
¡û
Identical group No.510284 (9 seq.)
>R05100170
AP008208
Plant
Oryza sativa Japonica Group
895879
895954
+
Ala
CGC
[RAP-DB]
¡û
>R05100234
AP008209
Plant
Oryza sativa Japonica Group
11529695
11529770
+
Ala
CGC
[RAP-DB]
¡û
>R05100335
AP008210
Plant
Oryza sativa Japonica Group
31483611
31483536
-
Ala
CGC
[RAP-DB]
¡û
>R05100473
AP008213
Plant
Oryza sativa Japonica Group
29873231
29873154
-
Ala
CGC
[RAP-DB]
¡û
>AD01000089
NC_003070
Plant
Arabidopsis thaliana
23933136
23933210
+
Ala
CGC
[TAIR]
¡û
>AD01000333
NC_003075
Plant
Arabidopsis thaliana
12429598
12429672
+
Ala
CGC
[TAIR]
¡û
>AD01000357
NC_003075
Plant
Arabidopsis thaliana
13885263
13885191
-
Ala
CGC
[TAIR]
¡û
>AD01000426
NC_003076
Plant
Arabidopsis thaliana
24530176
24530250
+
Ala
CGC
[TAIR]
¡û
>AD01000470
NC_003076
Plant
Arabidopsis thaliana
2587898
2587826
-
Ala
CGC
[TAIR]
¡û
Identical group No.564774 (1 seq.)
>R05100423
AP008212
Plant
Oryza sativa Japonica Group
147701
147776
+
Ala
CGC
[RAP-DB]
¡û
Identical group No.587030 (1 seq.)
>AD01000175
NC_003071
Plant
Arabidopsis thaliana
9591026
9591100
+
Ala
CGC
[TAIR]
¡û
Identical group No.587041 (1 seq.)
>AD01000283
NC_003074
Plant
Arabidopsis thaliana
22860126
22860200
+
Ala
CGC
[TAIR]
¡û
Identical group No.604548 (1 seq.)
>R05100330
AP008210
Plant
Oryza sativa Japonica Group
34735075
34735000
-
Ala
CGC
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK