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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CGT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.714700 (2 seq.)
>R05100435
AP008212
Plant
Oryza sativa Japonica Group
31876241
31876317
+
Thr
CGT
[RAP-DB]
¡û
>WENV11100182
ADWX01314193
Ant fungus garden metagenome, Atta colombica fungus garden
170
241
+
Thr
CGT
[ENA]
¡û
Identical group No.721418 (4 seq.)
>R05100188
AP008208
Plant
Oryza sativa Japonica Group
28098846
28098922
+
Thr
CGT
[RAP-DB]
¡û
>R05100326
AP008210
Plant
Oryza sativa Japonica Group
28802446
28802520
+
Thr
CGT
[RAP-DB]
¡û
>R05100453
AP008212
Plant
Oryza sativa Japonica Group
147986
147912
-
Thr
CGT
[RAP-DB]
¡û
>R05100543
AP008215
Plant
Oryza sativa Japonica Group
22743719
22743793
+
Thr
CGT
[RAP-DB]
¡û
Identical group No.735137 (1 seq.)
>AD01000229
NC_003071
Plant
Arabidopsis thaliana
1123461
1123390
-
Thr
CGT
[TAIR]
¡û
Identical group No.735138 (1 seq.)
>AD01000230
NC_003071
Plant
Arabidopsis thaliana
1114055
1113984
-
Thr
CGT
[TAIR]
¡û
Identical group No.741475 (3 seq.)
>AD01000014
NC_003070
Plant
Arabidopsis thaliana
4709634
4709708
+
Thr
CGT
[TAIR]
¡û
>AD01000100
NC_003070
Plant
Arabidopsis thaliana
28440888
28440961
+
Thr
CGT
[TAIR]
¡û
>AD01000427
NC_003076
Plant
Arabidopsis thaliana
24531667
24531739
+
Thr
CGT
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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