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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CTG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.687898 (2 seq.)
>R05100174
AP008208
Plant
Oryza sativa Japonica Group
7651398
7651474
+
Gln
CTG
[RAP-DB]
¡û
>R05100246
AP008209
Plant
Oryza sativa Japonica Group
27270065
27270141
+
Gln
CTG
[RAP-DB]
¡û
Identical group No.687899 (1 seq.)
>R05100251
AP008209
Plant
Oryza sativa Japonica Group
32942088
32942162
+
Gln
CTG
[RAP-DB]
¡û
Identical group No.706784 (2 seq.)
>R05100010
AP008207
Plant
Oryza sativa Japonica Group
7456418
7456492
+
Gln
CTG
[RAP-DB]
¡û
>R05100378
AP008211
Plant
Oryza sativa Japonica Group
8601428
8601502
+
Gln
CTG
[RAP-DB]
¡û
Identical group No.706785 (1 seq.)
>R05100024
AP008207
Plant
Oryza sativa Japonica Group
34069519
34069593
+
Gln
CTG
[RAP-DB]
¡û
Identical group No.706791 (1 seq.)
>AD01000318
NC_003075
Plant
Arabidopsis thaliana
1501607
1501678
+
Gln
CTG
[TAIR]
¡û
Identical group No.706796 (4 seq.)
>AD01000170
NC_003071
Plant
Arabidopsis thaliana
7039094
7039165
+
Gln
CTG
[TAIR]
¡û
>AD01000221
NC_003071
Plant
Arabidopsis thaliana
9270734
9270663
-
Gln
CTG
[TAIR]
¡û
>AD01000358
NC_003075
Plant
Arabidopsis thaliana
13882988
13882917
-
Gln
CTG
[TAIR]
¡û
>AD01000378
NC_003075
Plant
Arabidopsis thaliana
424788
424716
-
Gln
CTG
[TAIR]
¡û
Identical group No.718808 (3 seq.)
>WENV170659777
JXWR01094240
[JXWR] soil metagenome; rice field; ambient CO2
563
492
-
Gln
CTG
[ENA]
¢þ
>R05100190
AP008208
Plant
Oryza sativa Japonica Group
30525575
30525649
+
Gln
CTG
[RAP-DB]
¡û
>R05100445
AP008212
Plant
Oryza sativa Japonica Group
12742842
12742768
-
Gln
CTG
[RAP-DB]
¡û
Identical group No.721415 (1 seq.)
>R05100442
AP008212
Plant
Oryza sativa Japonica Group
21784946
21784870
-
Gln
CTG
[RAP-DB]
¡û
Identical group No.735144 (1 seq.)
>AD01000284
NC_003074
Plant
Arabidopsis thaliana
22881807
22881878
+
Gln
CTG
[TAIR]
¡û
Identical group No.741471 (2 seq.)
>AD01000005
NC_003070
Plant
Arabidopsis thaliana
892514
892585
+
Gln
CTG
[TAIR]
¡û
>AD01000401
NC_003076
Plant
Arabidopsis thaliana
7387888
7387959
+
Gln
CTG
[TAIR]
¡û
Identical group No.745894 (1 seq.)
>R05300019
AP008218
Plant
Oryza sativa Japonica Group
27206688
27206764
+
Gln
CTG
[RAP-DB]
¡û
Identical group No.772291 (1 seq.)
>AD01000156
NC_003070
Plant
Arabidopsis thaliana
111961
111890
-
Gln
CTG
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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