This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = CTT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462872 (20 seq.)
>WENV181314477
OFJK01003625
[OFJK] marine metagenome; seawater
315
388
+
Lys
CTT
[ENA]
¢þ
>WENV170659731
JXWR01056084
[JXWR] soil metagenome; rice field; ambient CO2
73
1
-
Lys
CTT
[ENA]
¢þ
>WENV170659812
JXWR01136597
[JXWR] soil metagenome; rice field; ambient CO2
346
418
+
Lys
CTT
[ENA]
¢þ
>WENV170659955
JXWS01055810
[JXWS] soil metagenome; rice field; elevated CO2
256
330
+
Lys
CTT
[ENA]
¢þ
>R05100021
AP008207
Plant
Oryza sativa Japonica Group
31952926
31953001
+
Lys
CTT
[RAP-DB]
¡û
>R05100034
AP008207
Plant
Oryza sativa Japonica Group
37844893
37844968
+
Lys
CTT
[RAP-DB]
¡û
>R05100044
AP008207
Plant
Oryza sativa Japonica Group
44968283
44968360
+
Lys
CTT
[RAP-DB]
¡û
>R05100099
AP008217
Plant
Oryza sativa Japonica Group
31024107
31024182
+
Lys
CTT
[RAP-DB]
¡û
>R05100144
AP008218
Plant
Oryza sativa Japonica Group
23972021
23971946
-
Lys
CTT
[RAP-DB]
¡û
>R05100241
AP008209
Plant
Oryza sativa Japonica Group
17510980
17511055
+
Lys
CTT
[RAP-DB]
¡û
>R05100400
AP008211
Plant
Oryza sativa Japonica Group
26510265
26510190
-
Lys
CTT
[RAP-DB]
¡û
>R05100401
AP008211
Plant
Oryza sativa Japonica Group
26012851
26012776
-
Lys
CTT
[RAP-DB]
¡û
>R05100415
AP008211
Plant
Oryza sativa Japonica Group
16377382
16377307
-
Lys
CTT
[RAP-DB]
¡û
>R05100504
AP008214
Plant
Oryza sativa Japonica Group
19723672
19723747
+
Lys
CTT
[RAP-DB]
¡û
>R05100505
AP008214
Plant
Oryza sativa Japonica Group
19734548
19734623
+
Lys
CTT
[RAP-DB]
¡û
>R05100506
AP008214
Plant
Oryza sativa Japonica Group
19966037
19966112
+
Lys
CTT
[RAP-DB]
¡û
>R05100535
AP008215
Plant
Oryza sativa Japonica Group
13406475
13406550
+
Lys
CTT
[RAP-DB]
¡û
>R05100555
AP008215
Plant
Oryza sativa Japonica Group
11490408
11490333
-
Lys
CTT
[RAP-DB]
¡û
>R05100587
AP008216
Plant
Oryza sativa Japonica Group
21626237
21626162
-
Lys
CTT
[RAP-DB]
¡û
>R05100594
AP008216
Plant
Oryza sativa Japonica Group
17261396
17261321
-
Lys
CTT
[RAP-DB]
¡û
Identical group No.530767 (2 seq.)
>WENV180798249
ODJB01376837
[ODJB] human metagenome; G_DNA_Supragingival plaque
151
223
+
Lys
CTT
[ENA]
¢þ
>AD01000252
NC_003074
Plant
Arabidopsis thaliana
5632852
5632925
+
Lys
CTT
[TAIR]
¡û
Identical group No.536281 (20 seq.)
>WENV181320279
OFKG01006291
[OFKG] marine metagenome; seawater
724
650
-
Lys
CTT
[ENA]
¢þ
>WENV170481693
CEVL01319056
[CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
795
723
-
Lys
CTT
[ENA]
¢þ
>WENV170501464
CEVU01122068
[CEVU] marine metagenome genome assembly TARA_151_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
666
592
-
Lys
CTT
[ENA]
¢þ
>WENV170660068
JXWS01127334
[JXWS] soil metagenome; rice field; elevated CO2
111
39
-
Lys
CTT
[ENA]
¢þ
>AD01000003
NC_003070
Plant
Arabidopsis thaliana
604402
604474
+
Lys
CTT
[TAIR]
¡û
>AD01000023
NC_003070
Plant
Arabidopsis thaliana
7016516
7016589
+
Lys
CTT
[TAIR]
¡û
>AD01000061
NC_003070
Plant
Arabidopsis thaliana
17731840
17731914
+
Lys
CTT
[TAIR]
¡û
>AD01000142
NC_003070
Plant
Arabidopsis thaliana
5518134
5518062
-
Lys
CTT
[TAIR]
¡û
>AD01000155
NC_003070
Plant
Arabidopsis thaliana
309347
309275
-
Lys
CTT
[TAIR]
¡û
>AD01000202
NC_003071
Plant
Arabidopsis thaliana
18703678
18703750
+
Lys
CTT
[TAIR]
¡û
>AD01000260
NC_003074
Plant
Arabidopsis thaliana
11959167
11959240
+
Lys
CTT
[TAIR]
¡û
>AD01000290
NC_003074
Plant
Arabidopsis thaliana
22470313
22470241
-
Lys
CTT
[TAIR]
¡û
>AD01000293
NC_003074
Plant
Arabidopsis thaliana
20813589
20813517
-
Lys
CTT
[TAIR]
¡û
>AD01000315
NC_003075
Plant
Arabidopsis thaliana
33800
33872
+
Lys
CTT
[TAIR]
¡û
>AD01000322
NC_003075
Plant
Arabidopsis thaliana
7256415
7256487
+
Lys
CTT
[TAIR]
¡û
>AD01000325
NC_003075
Plant
Arabidopsis thaliana
8979656
8979729
+
Lys
CTT
[TAIR]
¡û
>AD01000366
NC_003075
Plant
Arabidopsis thaliana
11954813
11954741
-
Lys
CTT
[TAIR]
¡û
>AD01000392
NC_003076
Plant
Arabidopsis thaliana
4530474
4530546
+
Lys
CTT
[TAIR]
¡û
>AD01000478
NC_003076
Plant
Arabidopsis thaliana
508502
508430
-
Lys
CTT
[TAIR]
¡û
>WENV032577
AACY021455279
Marine microbial communities from Global Ocean Sampling (GOS)
590
515
-
Lys
CTT
[ENA]
Identical group No.541271 (1 seq.)
>AD01000364
NC_003075
Plant
Arabidopsis thaliana
13006306
13006234
-
Lys
CTT
[TAIR]
¡û
Identical group No.604542 (1 seq.)
>R05100136
AP008218
Plant
Oryza sativa Japonica Group
23647958
23648033
+
Lys
CTT
[RAP-DB]
¡û
Identical group No.641891 (1 seq.)
>R05100588
AP008216
Plant
Oryza sativa Japonica Group
21626004
21625929
-
Lys
CTT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK