This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = GCC
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.691867 (3 seq.)
>WENV180889294
ODMN01026473
[ODMN] human metagenome; G_DNA_Supragingival plaque
708
781
+
Gly
GCC
[ENA]
¢þ
>WENV181446363
OGDT01001687
[OGDT] metagenome; Human gut stool
2627
2554
-
Gly
GCC
[ENA]
¢þ
>AD01000224
NC_003071
Plant
Arabidopsis thaliana
3444434
3444361
-
Gly
GCC
[TAIR]
¡û
Identical group No.782067 (98 seq.)
>WENV170659483
JXWR01006722
[JXWR] soil metagenome; rice field; ambient CO2
2569
2499
-
Gly
GCC
[ENA]
¢þ
>CHL1810000244
AM777385
Viridiplantae
Lolium perenne (AM777385)
12282
12353
+
Gly
GCC
[ENA]
¡û
>CHL1810001260
EU325680
Viridiplantae
Brachypodium distachyon (EU325680)
12088
12159
+
Gly
GCC
[ENA]
¡û
>CHL1810001670
FJ466687
Viridiplantae
Festuca arundinacea (FJ466687)
12250
12321
+
Gly
GCC
[ENA]
¡û
>CHL1810001970
FJ970915
Viridiplantae
Bambusa oldhamii (FJ970915)
12459
12529
+
Gly
GCC
[ENA]
¡û
>CHL1810001995
FJ970916
Viridiplantae
Dendrocalamus latiflorus (FJ970916)
12490
12560
+
Gly
GCC
[ENA]
¡û
>CHL1810003402
HQ154129
Viridiplantae
Phyllostachys nigra var. henonis (HQ154129)
12924
12994
+
Gly
GCC
[ENA]
¡û
>CHL1810003767
HQ337793
Viridiplantae
Acidosasa purpurea (HQ337793)
12941
13011
+
Gly
GCC
[ENA]
¡û
>CHL1810003796
HQ337796
Viridiplantae
Phyllostachys edulis (HQ337796)
12931
13001
+
Gly
GCC
[ENA]
¡û
>CHL1810003825
HQ337797
Viridiplantae
Bambusa emeiensis (HQ337797)
12478
12548
+
Gly
GCC
[ENA]
¡û
>CHL1810004456
JN005831
Viridiplantae
Oryza meridionalis (JN005831)
12336
12406
+
Gly
GCC
[ENA]
¡û
>CHL1810004485
JN005832
Viridiplantae
Oryza rufipogon (JN005832)
12334
12404
+
Gly
GCC
[ENA]
¡û
>CHL1810004847
JN415113
Viridiplantae
Phyllostachys propinqua (JN415113)
12925
12995
+
Gly
GCC
[ENA]
¡û
>CHL1810005603
JX235347
Viridiplantae
Arundinaria gigantea (JX235347)
12919
12989
+
Gly
GCC
[ENA]
¡û
>CHL1810006189
JX513413
Viridiplantae
Arundinaria fargesii (JX513413)
12925
12995
+
Gly
GCC
[ENA]
¡û
>CHL1810006218
JX513414
Viridiplantae
Sarocalamus faberi (JX513414)
12926
12996
+
Gly
GCC
[ENA]
¡û
>CHL1810006247
JX513415
Viridiplantae
Chimonocalamus longiusculus (JX513415)
12947
13017
+
Gly
GCC
[ENA]
¡û
>CHL1810006276
JX513416
Viridiplantae
Fargesia nitida (JX513416)
12865
12935
+
Gly
GCC
[ENA]
¡û
>CHL1810006305
JX513417
Viridiplantae
Fargesia spathacea (JX513417)
12924
12994
+
Gly
GCC
[ENA]
¡û
>CHL1810006334
JX513418
Viridiplantae
Fargesia yunnanensis (JX513418)
12925
12995
+
Gly
GCC
[ENA]
¡û
>CHL1810006392
JX513420
Viridiplantae
Gelidocalamus tessellatus (JX513420)
12939
13009
+
Gly
GCC
[ENA]
¡û
>CHL1810006420
JX513421
Viridiplantae
Indocalamus wilsonii (JX513421)
12977
13047
+
Gly
GCC
[ENA]
¡û
>CHL1810006449
JX513422
Viridiplantae
Indosasa sinica (JX513422)
12941
13011
+
Gly
GCC
[ENA]
¡û
>CHL1810006478
JX513423
Viridiplantae
Oligostachyum shiuyingianum (JX513423)
12936
13006
+
Gly
GCC
[ENA]
¡û
>CHL1810006507
JX513424
Viridiplantae
Pleioblastus maculatus (JX513424)
12950
13020
+
Gly
GCC
[ENA]
¡û
>CHL1810006536
JX513425
Viridiplantae
Thamnocalamus spathiflorus (JX513425)
12941
13011
+
Gly
GCC
[ENA]
¡û
>CHL1810006565
JX513426
Viridiplantae
Yushania levigata (JX513426)
12926
12996
+
Gly
GCC
[ENA]
¡û
>CHL1810008429
KC534841
Viridiplantae
Puelia olyriformis (KC534841)
12940
13010
+
Gly
GCC
[ENA]
¡û
>CHL1810008904
KC817462
Viridiplantae
Arundinaria appalachiana (KC817462)
12923
12993
+
Gly
GCC
[ENA]
¡û
>CHL1810008933
KC817463
Viridiplantae
Arundinaria tecta (KC817463)
12914
12984
+
Gly
GCC
[ENA]
¡û
>CHL1810009919
KF359911
Viridiplantae
Oryza rhizomatis (KF359911)
12420
12490
+
Gly
GCC
[ENA]
¡û
>CHL1810009948
KF359912
Viridiplantae
Oryza eichingeri (KF359912)
12419
12489
+
Gly
GCC
[ENA]
¡û
>CHL1810009977
KF359913
Viridiplantae
Oryza alta (KF359913)
12419
12489
+
Gly
GCC
[ENA]
¡û
>CHL1810010006
KF359914
Viridiplantae
Oryza grandiglumis (KF359914)
12420
12490
+
Gly
GCC
[ENA]
¡û
>CHL1810010035
KF359915
Viridiplantae
Oryza latifolia (KF359915)
12416
12486
+
Gly
GCC
[ENA]
¡û
>CHL1810010064
KF359918
Viridiplantae
Oryza longiglumis (KF359918)
12357
12427
+
Gly
GCC
[ENA]
¡û
>CHL1810010093
KF359919
Viridiplantae
Oryza ridleyi (KF359919)
12357
12427
+
Gly
GCC
[ENA]
¡û
>CHL1810010122
KF359921
Viridiplantae
Oryza meyeriana (KF359921)
12350
12420
+
Gly
GCC
[ENA]
¡û
>CHL1810010151
KF359922
Viridiplantae
Leersia japonica (KF359922)
11904
11974
+
Gly
GCC
[ENA]
¡û
>CHL1810010589
KF730315
Viridiplantae
Phragmites australis (KF730315)
12791
12861
+
Gly
GCC
[ENA]
¡û
>CHL1810012661
KJ722536
Viridiplantae
Bambusa multiplex (KJ722536)
12463
12533
+
Gly
GCC
[ENA]
¡û
>CHL1810012690
KJ722540
Viridiplantae
Phyllostachys sulphurea (KJ722540)
12919
12989
+
Gly
GCC
[ENA]
¡û
>CHL1810013319
KJ830774
Viridiplantae
Oryza australiensis (KJ830774)
12352
12422
+
Gly
GCC
[ENA]
¡û
>CHL1810014067
KM103369
Viridiplantae
Oryza sativa (KM103369)
12270
12340
+
Gly
GCC
[ENA]
¡û
>CHL1810014096
KM103375
Viridiplantae
Oryza punctata (KM103375)
11917
11987
+
Gly
GCC
[ENA]
¡û
>CHL1810015919
KM881634
Viridiplantae
Oryza barthii (KM881634)
12341
12411
+
Gly
GCC
[ENA]
¡û
>CHL1810015948
KM881640
Viridiplantae
Oryza glumipatula (KM881640)
12328
12398
+
Gly
GCC
[ENA]
¡û
>CHL1810015977
KM881641
Viridiplantae
Oryza longistaminata (KM881641)
12328
12398
+
Gly
GCC
[ENA]
¡û
>CHL1810016006
KM881643
Viridiplantae
Oryza officinalis (KM881643)
12420
12490
+
Gly
GCC
[ENA]
¡û
>CHL1810019808
KT161956
Viridiplantae
Zizania latifolia (KT161956)
12071
12141
+
Gly
GCC
[ENA]
¡û
>CHL1810021217
KT428377
Viridiplantae
Pseudosasa japonica (KT428377)
12504
12574
+
Gly
GCC
[ENA]
¡û
>CHL1810021970
KT692644
Viridiplantae
Stipa lipskyi (KT692644)
103410
103481
+
Gly
GCC
[ENA]
¡û
>CHL1810023985
KT983629
Viridiplantae
Stipa purpurea (KT983629)
12225
12296
+
Gly
GCC
[ENA]
¡û
>CHL1810024042
KT992850
Viridiplantae
Oryza brachyantha (KT992850)
12231
12301
+
Gly
GCC
[ENA]
¡û
>CHL1810024410
KU179220
Viridiplantae
Oryza minuta (KU179220)
12217
12287
+
Gly
GCC
[ENA]
¡û
>CHL1810030897
KX109945
Viridiplantae
Arundo donax (KX109945)
12622
12692
+
Gly
GCC
[ENA]
¡û
>CHL1810030926
KX109946
Viridiplantae
Arundo plinii (KX109946)
12632
12702
+
Gly
GCC
[ENA]
¡û
>CHL1810033260
KX372537
Viridiplantae
Ampelocalamus naibunensis (KX372537)
12950
13020
+
Gly
GCC
[ENA]
¡û
>CHL1810035165
KX756180
Viridiplantae
Avena sterilis (KX756180)
12172
12244
+
Gly
GCC
[ENA]
¡û
>CHL1810037866
KX904877
Viridiplantae
Fargesia denudata (KX904877)
11973
12043
+
Gly
GCC
[ENA]
¡û
>CHL1810041880
KY432778
Viridiplantae
Gastridium ventricosum (KY432778)
12143
12215
+
Gly
GCC
[ENA]
¡û
>CHL1810041967
KY432781
Viridiplantae
Holcus lanatus (KY432781)
12151
12222
+
Gly
GCC
[ENA]
¡û
>CHL1810042081
KY432785
Viridiplantae
Lygeum spartum (KY432785)
12117
12187
+
Gly
GCC
[ENA]
¡û
>CHL1810042168
KY432788
Viridiplantae
Nassella hyalina (KY432788)
12121
12192
+
Gly
GCC
[ENA]
¡û
>CHL1810042313
KY432793
Viridiplantae
Rytidosperma semiannulare (KY432793)
11851
11921
+
Gly
GCC
[ENA]
¡û
>CHL1810042370
KY432795
Viridiplantae
Schismus arabicus (KY432795)
12066
12136
+
Gly
GCC
[ENA]
¡û
>CHL1810042428
KY432798
Viridiplantae
Tribolium hispidum (KY432798)
12052
12122
+
Gly
GCC
[ENA]
¡û
>CHL1810042602
KY432804
Viridiplantae
Catapodium rigidum (KY432804)
11783
11854
+
Gly
GCC
[ENA]
¡û
>CHL1810042660
KY432806
Viridiplantae
Cynosurus cristatus (KY432806)
11955
12026
+
Gly
GCC
[ENA]
¡û
>CHL1810049177
MF035969
Viridiplantae
Amphipogon caricinus (MF035969)
12472
12542
+
Gly
GCC
[ENA]
¡û
>CHL1810049206
MF035970
Viridiplantae
Amphipogon turbinatus (MF035970)
12149
12219
+
Gly
GCC
[ENA]
¡û
>CHL1810049293
MF035975
Viridiplantae
Crinipes abyssinicus (MF035975)
12886
12956
+
Gly
GCC
[ENA]
¡û
>CHL1810049322
MF035976
Viridiplantae
Crinipes longifolius (MF035976)
12875
12945
+
Gly
GCC
[ENA]
¡û
>CHL1810049380
MF035979
Viridiplantae
Dregeochloa pumilla (MF035979)
12661
12731
+
Gly
GCC
[ENA]
¡û
>CHL1810049583
MF035993
Viridiplantae
Phaenanthoecium koestlinii (MF035993)
12266
12337
+
Gly
GCC
[ENA]
¡û
>CHL1810049641
MF035997
Viridiplantae
Styppeiochloa gynoglossa (MF035997)
12908
12978
+
Gly
GCC
[ENA]
¡û
>CHL1810052546
MF460972
Viridiplantae
Prosphytochloa prehensilis (MF460972)
12336
12406
+
Gly
GCC
[ENA]
¡û
>CHL1810052633
MF460976
Viridiplantae
Agrostis gigantea (MF460976)
12167
12239
+
Gly
GCC
[ENA]
¡û
>CHL1810052720
MF460979
Viridiplantae
Connorochloa tenuis (MF460979)
12094
12165
+
Gly
GCC
[ENA]
¡û
>CHL1810052749
MF460980
Viridiplantae
Rytidosperma pallidum (MF460980)
12275
12345
+
Gly
GCC
[ENA]
¡û
>CHL1810052778
MF460981
Viridiplantae
Drepanostachyum falcatum (MF460981)
12921
12991
+
Gly
GCC
[ENA]
¡û
>CHL1810052807
MF460982
Viridiplantae
Lamarckia aurea (MF460982)
12153
12224
+
Gly
GCC
[ENA]
¡û
>CHL1810052865
MF460984
Viridiplantae
Zingeria biebersteiniana (MF460984)
12181
12252
+
Gly
GCC
[ENA]
¡û
>CHL1810053432
MF563375
Viridiplantae
Merxmuellera tsaratananensis (MF563375)
12529
12599
+
Gly
GCC
[ENA]
¡û
>CHL1810054084
MF614917
Viridiplantae
Littledalea racemosa (MF614917)
12117
12188
+
Gly
GCC
[ENA]
¡û
>CHL1810057336
MG383937
Viridiplantae
Oryza coarctata (MG383937)
12556
12626
+
Gly
GCC
[ENA]
¡û
>CHL1810057710
MG463107
Viridiplantae
Littledalea przevalskyi (MG463107)
12105
12176
+
Gly
GCC
[ENA]
¡û
>CHL1810058125
MG570144
Viridiplantae
Littledalea alaica (MG570144)
12105
12176
+
Gly
GCC
[ENA]
¡û
>R05100029
AP008207
Plant
Oryza sativa Japonica Group
35300771
35300844
+
Gly
GCC
[RAP-DB]
¡û
>R05100297
AP008210
Plant
Oryza sativa Japonica Group
9227394
9227467
+
Gly
GCC
[RAP-DB]
¡û
>R05100303
AP008210
Plant
Oryza sativa Japonica Group
9414296
9414369
+
Gly
GCC
[RAP-DB]
¡û
>R05100565
AP008216
Plant
Oryza sativa Japonica Group
11217613
11217686
+
Gly
GCC
[RAP-DB]
¡û
>CHL090100896
AP006728
Viridiplantae
Oryza nivara
12273
12343
+
Gly
GCC
[ENA]
¡û
>CHL090101457
AY522329
Viridiplantae
Oryza sativa Indica Group
12270
12340
+
Gly
GCC
[ENA]
¡û
>CHL090101486
AY522331
Viridiplantae
Oryza sativa (japonica cultivar-group) isolate PA64S
12333
12403
+
Gly
GCC
[ENA]
¡û
>CHL090102775
EF115541
Viridiplantae
Hordeum vulgare subsp. vulgare
12647
12718
+
Gly
GCC
[ENA]
¡û
>CHL090102833
EF115543
Viridiplantae
Agrostis stolonifera
12710
12782
+
Gly
GCC
[ENA]
¡û
>CHL090103235
X15901
Viridiplantae
Oryza sativa Japonica Group
12331
12401
+
Gly
GCC
[ENA]
¡û
Identical group No.782142 (33 seq.)
>WENV180541325
OCHR01097994
[OCHR] human gut metagenome; human gut
267
195
-
Gly
GCC
[ENA]
¢þ
>WENV170659823
JXWR01148052
[JXWR] soil metagenome; rice field; ambient CO2
2
72
+
Gly
GCC
[ENA]
¢þ
>R05100017
AP008207
Plant
Oryza sativa Japonica Group
26004251
26004324
+
Gly
GCC
[RAP-DB]
¡û
>R05100208
AP008208
Plant
Oryza sativa Japonica Group
16411447
16411374
-
Gly
GCC
[RAP-DB]
¡û
>R05100223
AP008208
Plant
Oryza sativa Japonica Group
6184849
6184776
-
Gly
GCC
[RAP-DB]
¡û
>R05100229
AP008209
Plant
Oryza sativa Japonica Group
2138384
2138457
+
Gly
GCC
[RAP-DB]
¡û
>R05100233
AP008209
Plant
Oryza sativa Japonica Group
10439334
10439407
+
Gly
GCC
[RAP-DB]
¡û
>R05100245
AP008209
Plant
Oryza sativa Japonica Group
26430118
26430191
+
Gly
GCC
[RAP-DB]
¡û
>R05100253
AP008209
Plant
Oryza sativa Japonica Group
33867732
33867805
+
Gly
GCC
[RAP-DB]
¡û
>R05100284
AP008209
Plant
Oryza sativa Japonica Group
2606689
2606616
-
Gly
GCC
[RAP-DB]
¡û
>R05100338
AP008210
Plant
Oryza sativa Japonica Group
26072301
26072228
-
Gly
GCC
[RAP-DB]
¡û
>R05100384
AP008211
Plant
Oryza sativa Japonica Group
24303211
24303284
+
Gly
GCC
[RAP-DB]
¡û
>R05100396
AP008211
Plant
Oryza sativa Japonica Group
29659773
29659700
-
Gly
GCC
[RAP-DB]
¡û
>R05100418
AP008211
Plant
Oryza sativa Japonica Group
4884007
4883934
-
Gly
GCC
[RAP-DB]
¡û
>R05100426
AP008212
Plant
Oryza sativa Japonica Group
2364637
2364710
+
Gly
GCC
[RAP-DB]
¡û
>R05100441
AP008212
Plant
Oryza sativa Japonica Group
24061359
24061286
-
Gly
GCC
[RAP-DB]
¡û
>R05100459
AP008213
Plant
Oryza sativa Japonica Group
3692188
3692261
+
Gly
GCC
[RAP-DB]
¡û
>R05100523
AP008214
Plant
Oryza sativa Japonica Group
19325281
19325208
-
Gly
GCC
[RAP-DB]
¡û
>R05100585
AP008216
Plant
Oryza sativa Japonica Group
23358198
23358271
+
Gly
GCC
[RAP-DB]
¡û
>AD01000122
NC_003070
Plant
Arabidopsis thaliana
22394707
22394637
-
Gly
GCC
[TAIR]
¡û
>AD01000123
NC_003070
Plant
Arabidopsis thaliana
22313484
22313414
-
Gly
GCC
[TAIR]
¡û
>AD01000151
NC_003070
Plant
Arabidopsis thaliana
2111218
2111148
-
Gly
GCC
[TAIR]
¡û
>AD01000152
NC_003070
Plant
Arabidopsis thaliana
2107468
2107398
-
Gly
GCC
[TAIR]
¡û
>AD01000179
NC_003071
Plant
Arabidopsis thaliana
12881591
12881662
+
Gly
GCC
[TAIR]
¡û
>AD01000180
NC_003071
Plant
Arabidopsis thaliana
12882734
12882804
+
Gly
GCC
[TAIR]
¡û
>AD01000213
NC_003071
Plant
Arabidopsis thaliana
12976018
12975948
-
Gly
GCC
[TAIR]
¡û
>AD01000276
NC_003074
Plant
Arabidopsis thaliana
19984941
19985011
+
Gly
GCC
[TAIR]
¡û
>AD01000278
NC_003074
Plant
Arabidopsis thaliana
21542282
21542352
+
Gly
GCC
[TAIR]
¡û
>AD01000282
NC_003074
Plant
Arabidopsis thaliana
22842522
22842592
+
Gly
GCC
[TAIR]
¡û
>AD01000342
NC_003075
Plant
Arabidopsis thaliana
15671393
15671463
+
Gly
GCC
[TAIR]
¡û
>AD01000400
NC_003076
Plant
Arabidopsis thaliana
6401239
6401309
+
Gly
GCC
[TAIR]
¡û
>AD01000435
NC_003076
Plant
Arabidopsis thaliana
26682778
26682708
-
Gly
GCC
[TAIR]
¡û
>AD01000471
NC_003076
Plant
Arabidopsis thaliana
2212748
2212678
-
Gly
GCC
[TAIR]
¡û
Identical group No.816421 (2 seq.)
>AD01000086
NC_003070
Plant
Arabidopsis thaliana
22428167
22428237
+
Gly
GCC
[TAIR]
¡û
>AD01000199
NC_003071
Plant
Arabidopsis thaliana
17660778
17660848
+
Gly
GCC
[TAIR]
¡û
Identical group No.816422 (1 seq.)
>AD01000312
NC_003074
Plant
Arabidopsis thaliana
1843394
1843324
-
Gly
GCC
[TAIR]
¡û
Identical group No.819386 (2 seq.)
>AD01000094
NC_003070
Plant
Arabidopsis thaliana
26973389
26973459
+
Gly
GCC
[TAIR]
¡û
>AD01000452
NC_003076
Plant
Arabidopsis thaliana
17495611
17495540
-
Gly
GCC
[TAIR]
¡û
Identical group No.819387 (1 seq.)
>AD01000479
NC_003076
Plant
Arabidopsis thaliana
389963
389893
-
Gly
GCC
[TAIR]
¡û
Identical group No.821288 (1 seq.)
>R05100156
AP008218
Plant
Oryza sativa Japonica Group
19445679
19445606
-
Gly
GCC
[RAP-DB]
¡û
Identical group No.828724 (1 seq.)
>R05100460
AP008213
Plant
Oryza sativa Japonica Group
3697977
3698050
+
Gly
GCC
[RAP-DB]
¡û
Identical group No.828725 (1 seq.)
>R05100472
AP008213
Plant
Oryza sativa Japonica Group
30135856
30135783
-
Gly
GCC
[RAP-DB]
¡û
Identical group No.834066 (1 seq.)
>AD01000121
NC_003070
Plant
Arabidopsis thaliana
22397662
22397592
-
Gly
GCC
[TAIR]
¡û
Identical group No.835769 (1 seq.)
>R05100199
AP008208
Plant
Oryza sativa Japonica Group
25544723
25544650
-
Gly
GCC
[RAP-DB]
¡û
Identical group No.835770 (1 seq.)
>R05100209
AP008208
Plant
Oryza sativa Japonica Group
15032200
15032127
-
Gly
GCC
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK