This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = GCT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9311 (1 seq.)
>R05100102
AP008217
Plant
Oryza sativa Japonica Group
25871931
25871838
-
Ser
GCT
[RAP-DB]
¡û
Identical group No.12665 (15 seq.)
>R05100180
AP008208
Plant
Oryza sativa Japonica Group
15036617
15036709
+
Ser
GCT
[RAP-DB]
¡û
>R05100189
AP008208
Plant
Oryza sativa Japonica Group
29930167
29930259
+
Ser
GCT
[RAP-DB]
¡û
>R05100356
AP008210
Plant
Oryza sativa Japonica Group
9409947
9409855
-
Ser
GCT
[RAP-DB]
¡û
>R05100362
AP008210
Plant
Oryza sativa Japonica Group
9223041
9222949
-
Ser
GCT
[RAP-DB]
¡û
>R05100583
AP008216
Plant
Oryza sativa Japonica Group
22945348
22945440
+
Ser
GCT
[RAP-DB]
¡û
>R05100609
AP008216
Plant
Oryza sativa Japonica Group
11213267
11213175
-
Ser
GCT
[RAP-DB]
¡û
>CHL090100233
AE009947
Viridiplantae
Saccharum hybrid cultivar SP-80-3280
70074
69982
-
Ser
GCT
[ENA]
¡û
>CHL090100860
AP006714
Viridiplantae
Saccharum officinarum
8448
8356
-
Ser
GCT
[ENA]
¡û
>CHL090100923
AP006728
Viridiplantae
Oryza nivara
7921
7829
-
Ser
GCT
[ENA]
¡û
>CHL090101484
AY522329
Viridiplantae
Oryza sativa Indica Group
7923
7831
-
Ser
GCT
[ENA]
¡û
>CHL090101513
AY522331
Viridiplantae
Oryza sativa (japonica cultivar-group) isolate PA64S
7917
7825
-
Ser
GCT
[ENA]
¡û
>CHL090101707
AY928077
Viridiplantae
Zea mays cultivar B73
8094
8002
-
Ser
GCT
[ENA]
¡û
>CHL090102830
EF115542
Viridiplantae
Sorghum bicolor
8944
8852
-
Ser
GCT
[ENA]
¡û
>CHL090103262
X15901
Viridiplantae
Oryza sativa Japonica Group
7916
7824
-
Ser
GCT
[ENA]
¡û
>CHL090103320
X86563
Viridiplantae
Zea mays
8099
8007
-
Ser
GCT
[ENA]
¡û
Identical group No.31854 (8 seq.)
>WENV181574728
OGJT01007231
[OGJT] metagenome; Human gut stool
89
179
+
Ser
GCT
[ENA]
¢þ
>WENV181597778
OGKZ01023539
[OGKZ] metagenome; Human gut stool
426
336
-
Ser
GCT
[ENA]
¢þ
>WENV181609439
OGLN01032556
[OGLN] metagenome; Human gut stool
425
335
-
Ser
GCT
[ENA]
¢þ
>WENV181634926
OGMW01048311
[OGMW] metagenome; Human gut stool
287
377
+
Ser
GCT
[ENA]
¢þ
>WENV181981965
OHAG01012350
[OHAG] human gut metagenome; faeces
1339
1249
-
Ser
GCT
[ENA]
¢þ
>WENV182642184
OJLL01004272
[OJLL] metagenome; surface
1348
1438
+
Ser
GCT
[ENA]
¢þ
>WENV170659087
JXWR01000009
[JXWR] soil metagenome; rice field; ambient CO2
32682
32773
+
Ser
GCT
[ENA]
¢þ
>R05100127
AP008218
Plant
Oryza sativa Japonica Group
20613271
20613363
+
Ser
GCT
[RAP-DB]
¡û
Identical group No.40764 (4 seq.)
>WENV180881090
ODLZ01150888
[ODLZ] human metagenome; G_DNA_Tongue dorsum
109
19
-
Ser
GCT
[ENA]
¢þ
>WENV182640138
OJLB01000438
[OJLB] metagenome; surface
5834
5744
-
Ser
GCT
[ENA]
¢þ
>AD01000164
NC_003071
Plant
Arabidopsis thaliana
3494381
3494471
+
Ser
GCT
[TAIR]
¡û
>AD01000226
NC_003071
Plant
Arabidopsis thaliana
3303823
3303733
-
Ser
GCT
[TAIR]
¡û
Identical group No.45271 (1 seq.)
>R05100531
AP008215
Plant
Oryza sativa Japonica Group
5315502
5315594
+
Ser
GCT
[RAP-DB]
¡û
Identical group No.181955 (10 seq.)
>WENV170659702
JXWR01035174
[JXWR] soil metagenome; rice field; ambient CO2
404
487
+
Ser
GCT
[ENA]
¢þ
>R05100096
AP008217
Plant
Oryza sativa Japonica Group
26396882
26396968
+
Ser
GCT
[RAP-DB]
¡û
>R05100171
AP008208
Plant
Oryza sativa Japonica Group
1079702
1079788
+
Ser
GCT
[RAP-DB]
¡û
>R05100227
AP008208
Plant
Oryza sativa Japonica Group
1480638
1480552
-
Ser
GCT
[RAP-DB]
¡û
>R05100449
AP008212
Plant
Oryza sativa Japonica Group
5428152
5428066
-
Ser
GCT
[RAP-DB]
¡û
>R05100452
AP008212
Plant
Oryza sativa Japonica Group
166313
166227
-
Ser
GCT
[RAP-DB]
¡û
>R05100463
AP008213
Plant
Oryza sativa Japonica Group
13978480
13978566
+
Ser
GCT
[RAP-DB]
¡û
>R05100467
AP008213
Plant
Oryza sativa Japonica Group
25883344
25883430
+
Ser
GCT
[RAP-DB]
¡û
>R05100468
AP008213
Plant
Oryza sativa Japonica Group
25885551
25885637
+
Ser
GCT
[RAP-DB]
¡û
>R05100520
AP008214
Plant
Oryza sativa Japonica Group
22882762
22882676
-
Ser
GCT
[RAP-DB]
¡û
Identical group No.196785 (2 seq.)
>AD01000109
NC_003070
Plant
Arabidopsis thaliana
29002286
29002205
-
Ser
GCT
[TAIR]
¡û
>AD01000334
NC_003075
Plant
Arabidopsis thaliana
12686139
12686220
+
Ser
GCT
[TAIR]
¡û
Identical group No.196786 (3 seq.)
>AD01000206
NC_003071
Plant
Arabidopsis thaliana
18310058
18309977
-
Ser
GCT
[TAIR]
¡û
>AD01000337
NC_003075
Plant
Arabidopsis thaliana
14267281
14267362
+
Ser
GCT
[TAIR]
¡û
>AD01000466
NC_003076
Plant
Arabidopsis thaliana
3287634
3287553
-
Ser
GCT
[TAIR]
¡û
Identical group No.205484 (2 seq.)
>AD01000208
NC_003071
Plant
Arabidopsis thaliana
17538785
17538702
-
Ser
GCT
[TAIR]
¡û
>AD01000472
NC_003076
Plant
Arabidopsis thaliana
2060235
2060152
-
Ser
GCT
[TAIR]
¡û
Identical group No.205486 (1 seq.)
>AD01000277
NC_003074
Plant
Arabidopsis thaliana
21487317
21487398
+
Ser
GCT
[TAIR]
¡û
Identical group No.205487 (1 seq.)
>AD01000291
NC_003074
Plant
Arabidopsis thaliana
22186916
22186835
-
Ser
GCT
[TAIR]
¡û
Identical group No.205488 (1 seq.)
>AD01000302
NC_003074
Plant
Arabidopsis thaliana
7319658
7319577
-
Ser
GCT
[TAIR]
¡û
Identical group No.207306 (1 seq.)
>AD01000439
NC_003076
Plant
Arabidopsis thaliana
26157270
26157189
-
Ser
GCT
[TAIR]
¡û
Identical group No.213543 (1 seq.)
>R05100477
AP008213
Plant
Oryza sativa Japonica Group
25884595
25884511
-
Ser
GCT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK