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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Plant
Anticodon = TAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98852 (8 seq.)
>R05900033
AP008210
Plant
Oryza sativa Japonica Group
9163032
9163662
+
Leu
TAA
[RAP-DB]
¡û
>R05900078
AP008216
Plant
Oryza sativa Japonica Group
11251810
11252440
+
Leu
TAA
[RAP-DB]
¡û
>R05900086
AP008216
Plant
Oryza sativa Japonica Group
20964377
20963747
-
Leu
TAA
[RAP-DB]
¡û
>R05900007
AP008207
Plant
Oryza sativa Japonica Group
35292500
35291870
-
Leu
TAA
[RAP-DB]
¡û
>R05900012
AP008218
Plant
Oryza sativa Japonica Group
11291210
11291839
+
Leu
TAA
[RAP-DB]
¡û
>CHL090800054
AP006728
Viridiplantae
Oryza nivara
46474
47101
+
Leu
TAA
[ENA]
¡û
>CHL090800105
AY522329
Viridiplantae
Oryza sativa Indica Group
46495
47122
+
Leu
TAA
[ENA]
¡û
>CHL090800113
AY522331
Viridiplantae
Oryza sativa (japonica cultivar-group) isolate PA64S
46548
47175
+
Leu
TAA
[ENA]
¡û
Identical group No.130264 (1 seq.)
>AD01000375
NC_003075
Plant
Arabidopsis thaliana
6837644
6837559
-
Leu
TAA
[TAIR]
¡û
Identical group No.160834 (1 seq.)
>R05100101
AP008217
Plant
Oryza sativa Japonica Group
27586109
27586024
-
Leu
TAA
[RAP-DB]
¡û
Identical group No.164847 (1 seq.)
>R05100041
AP008207
Plant
Oryza sativa Japonica Group
44502877
44502962
+
Leu
TAA
[RAP-DB]
¡û
Identical group No.170926 (3 seq.)
>AD01000195
NC_003071
Plant
Arabidopsis thaliana
15320234
15320316
+
Leu
TAA
[TAIR]
¡û
>AD01000211
NC_003071
Plant
Arabidopsis thaliana
15320467
15320385
-
Leu
TAA
[TAIR]
¡û
>AD01000381
NC_003076
Plant
Arabidopsis thaliana
984367
984449
+
Leu
TAA
[TAIR]
¡û
Identical group No.170927 (2 seq.)
>AD01000243
NC_003074
Plant
Arabidopsis thaliana
3090544
3090626
+
Leu
TAA
[TAIR]
¡û
>AD01000274
NC_003074
Plant
Arabidopsis thaliana
19637128
19637210
+
Leu
TAA
[TAIR]
¡û
Identical group No.173216 (2 seq.)
>R05100150
AP008218
Plant
Oryza sativa Japonica Group
20981112
20981027
-
Leu
TAA
[RAP-DB]
¡û
>R05100342
AP008210
Plant
Oryza sativa Japonica Group
24970434
24970349
-
Leu
TAA
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK