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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = CCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219617 (2 seq.)
>PHG14100763
HQ634194
Podoviridae
Vibrio phage VBP47 (HQ634194)
2550
2633
+
Trp
CCA
[ENA]
¡û
>PHG14100766
HQ634196
Podoviridae
Vibrio phage VBP32 (HQ634196)
4664
4581
-
Trp
CCA
[ENA]
¡û
Identical group No.585165 (1 seq.)
>PHG14103037
KJ936628
Podoviridae
Vibrio phage VPp1 IB4755 (KJ936628)
29782
29707
-
Trp
CCA
[ENA]
¡û
Identical group No.619422 (1 seq.)
>PHG181005624
MF431726
Podoviridae
Vibrio phage vB_ValP_IME271 (MF431726)
49326
49251
-
Trp
CCA
[ENA]
¡û
Identical group No.792393 (4 seq.)
>WENV170005131
AKYZ01002381
[AKYZ] insect gut metagenome;
263
336
+
Trp
CCA
[ENA]
¢þ
>WENV170005160
AKZA01001883
[AKZA] insect gut metagenome;
37984
38057
+
Trp
CCA
[ENA]
¢þ
>PHG181007397
MG873442
Podoviridae
Salmonella phage SE131 (MG873442)
88159
88086
-
Trp
CCA
[ENA]
¡û
>PHG14100565
HM997019
Podoviridae
Salmonella phage 7-11 beta4 (HM997019)
2732
2805
+
Trp
CCA
[ENA]
¡û
Identical group No.815983 (1 seq.)
>PHG14101424
JN882286
Podoviridae
Cronobacter phage vB_CsaP_GAP52 vB_CsaP_GAP-52 (JN882286)
2254
2327
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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